Inheritance and genetic diversity of some enzymes in the sexual and diploid pool of the agamic complex of Maximae (Panicum maximum Jacq., P. infestum Anders. and P. trichocladum K. Schum.)

La tribu des #Maximae (#Panicum maximum Jacq., #P. infestum Anders., #P. trichocladum K. Shum. ) comprend deux pools sympatriques avec différents modes de reproduction et de niveaux de ploidie : un pool tétraploïde et apomictique d'une part, et un pool plus petit, pool diploïde et sexué d'autre part. Chez ce dernier, la sexualité autorise ces croisements et rend ainsi possible la mise en évidence de la structure (monomérique ou dimérique) de 9 systèmes enzymatiques et de leur déterminisme génétique (16 loci). Des distorsions de ségrégation ont été observées dans les systèmes malate déshydrogenase et estérase. La diversité du pool diploïde est importante en accord avec son mode de reproduction (allogamie et anémophile). Cette diversité est divisée en 3 groupes correspondant à l'origine géographique des populations. Cette organisation est très proche de celle observée à partir de caractères morphologiques. (Résumé d'auteur

A complementary approach to estimate the internal pressure of fission gas bubbles by SEM-SIMS-EPMA in irradiated nuclear fuels

International audienceThe behaviour of gases produced by fission is of great importance for nuclear fuel in operation. Within this context, a decade ago, a general method for the characterisation of the fission gas including gas bubbles in an irradiated UO$_2$ nuclear fuel was developed and applied to determine the bubbles internal pressure. The method consists in the determination of the pressure, over a large population of bubbles, using three techniques: SEM, EPMA and SIMS. In this paper, a complementary approach using the information given by the same techniques is performed on an isolated bubble under the surface and is aiming for a better accuracy compared to the more general measurement of gas content. SEM and EPMA enable the detection of a bubble filled with xenon under the surface. SIMS enables the detection of the gas filling the bubble. The quantification is achieved using the EPMA data as reference at positions where no or nearly no bubbles are detected

Supersymmetric structure of the induced W gravities

We derive the supersymmetric structure present in W-gravities which has been already observed in various contexts as Yang-Mills theory, topological field theories, bosonic string and chiral W_{3}-gravity. This derivation which is made in the geometrical framework of Zucchini, necessitates the introduction of an appropriate new basis of variables which replace the canonical fields and their derivatives. This construction is used, in the W_{2}-case, to deduce from the Chern-Simons action the Wess-Zumino-Polyakov action.Comment: 17 pages, Latex. To appear in Class. Quantum. Gravit

Ozone comparison between Pandora #34, Dobson #061, OMI, and OMPS in Boulder, Colorado, for the period December 2013–December 2016

A one-time-calibrated (in December 2013) Pandora spectrometer instrument (Pan #034) has been compared to a periodically calibrated Dobson spectroradiometer (Dobson #061) co-located in Boulder, Colorado, and compared with two satellite instruments over a 3-year period (December 2013–December 2016). The results show good agreement between Pan #034 and Dobson #061 within their statistical uncertainties. Both records are corrected for ozone retrieval sensitivity to stratospheric temperature variability obtained from the Global Modeling Initiative (GMI) and Modern-Era Retrospective analysis for Research and Applications (MERRA-2) model calculations. Pandora #034 and Dobson #061 differ by an average of 2.1 ± 3.2 % when both instruments use their standard ozone absorption cross sections in the retrieval algorithms. The results show a relative drift (0.2 ± 0.08 % yr−1) between Pandora observations against NOAA Dobson in Boulder, CO, over a 3-year period of continuous operation. Pandora drifts relative to the satellite Ozone Monitoring Instrument (OMI) and the Ozone Mapping Profiler Suite (OMPS) are +0.18 ± 0.2 % yr−1 and −0.18 ± 0.2 % yr−1, respectively, where the uncertainties are 2 standard deviations. The drift between Dobson #061 and OMPS for a 5.5-year period (January 2012–June 2017) is −0.07 ± 0.06 % yr−1

Metabolic and chromosomal changes in a <i>Bacillus subtilis whiA</i> mutant

The conserved protein WhiA is present in most Gram-positive bacteria and plays a role in cell division. WhiA contains a DNA-binding motif and is a transcription regulator of the key cell division gene ftsZ in actinomycetes. In Bacillus subtilis, the absence of WhiA influences both cell division and chromosome segregation; however, the protein does not regulate any gene involved in these processes. In this study, we addressed three alternative mechanisms by which WhiA might exert its activity in B. subtilis and examined whether WhiA influences either (i) central carbon metabolism, (ii) fatty acid composition of the cell membrane, or (iii) chromosome organization. Mutations in glycolytic enzymes have been shown to influence both cell division and DNA replication. To measure the effect of WhiA on carbon metabolism, we tested different carbon sources and measured exometabolome fluxes. This revealed that the absence of WhiA does not affect glycolysis but does influence the pool of branched-chain fatty acid precursors. Due to the effect of WhiA on chromosome segregation, we examine chromosome organization in a ∆whiA mutant using chromosome conformation capture (Hi-C) analysis. This revealed a local reduction in short-range chromosome interactions. Together, these findings provide new avenues for future research into how this protein works in the non-actinomycete firmicutes

Annual transcriptome of a key zooplankton species, the copepod Calanus finmarchicus

The copepod Calanus finmarchicus (Crustacea, Copepoda) is a key zooplanktonic species with a crucial position in the North Atlantic food web and significant contributor to ocean carbon flux. Like many other high latitude animals, it has evolved a programmed arrested development called diapause to cope with long periods of limited food supply, while growth and reproduction are timed to take advantage of seasonal peaks in primary production. However, anthropogenic warming is inducing changes in the expected timing of phytoplankton blooms, suggesting phenological mismatches with negative consequences for the N. Atlantic ecosystem. While diapause mechanisms are mainly studied in terrestrial arthropods, specifically on laboratory model species, such as the fruit fly Drosophila, the molecular investigations of annual rhythms in wild marine species remain fragmentary. Here we performed a rigorous year-long monthly sampling campaign of C. finmarchicus in a Scottish Loch (UK; 56.45°N, 5.18°W) to generate an annual transcriptome. The mRNA of 36 samples (monthly triplicate of 25 individuals) have been deeply sequenced with an average depth of 137 ± 4 million reads (mean ± SE) per sample, aligned to the reference transcriptome, and filtered. We detail the quality assessment of the datasets and provide a high-quality resource for the investigation of wild annual transcriptomic rhythms (35,357 components) in a key diapausing zooplanktonic species

The first large catalogue of spectroscopic redshifts in Webb's First Deep Field, SMACS J0723.3−-7327

We present a spectroscopic redshift catalogue of the SMACS J0723.3$-$7327 field ("Webb's First Deep Field") obtained from JWST/NIRISS grism spectroscopy and supplemented with JWST/NIRSpec and VLT/MUSE redshifts. The catalogue contains a total of 190 sources with secure spectroscopic redshifts, including 156 NIRISS grism redshifts, 123 of which are for sources whose redshifts were previously unknown. These new grism redshifts are secured with two or more spectroscopic features (64 sources), or with a single spectral feature whose identity is secured from the object's nine-band photometric redshift (59 sources). These are complemented with 17 NIRSpec and 48 MUSE redshifts, including six new NIRSpec redshifts identified in this work. In addition to the $z_{\rm cl}=0.39$ cluster galaxy redshifts (for which we provide $\sim$40 new NIRISS absorption-line redshifts), we also find three prominent galaxy overdensities at higher redshifts - at $z=1.1$, $z=1.4$, and $z=2.0$ - that were until now not seen in the JWST/NIRSpec and VLT/MUSE data. The paper describes the characteristics of our spectroscopic redshift sample and the methodology we have employed to obtain it. Our redshift catalogue is made available to the community at https://niriss.github.io/smacs0723.Comment: 19 pages, 13 figures, 3 appendices. Accepted for publication in MNRA

Cell Size and the Initiation of DNA Replication in Bacteria

In eukaryotes, DNA replication is coupled to the cell cycle through the actions of cyclin-dependent kinases and associated factors. In bacteria, the prevailing view, based primarily from work in Escherichia coli, is that growth-dependent accumulation of the highly conserved initiator, DnaA, triggers initiation. However, the timing of initiation is unchanged in Bacillus subtilis mutants that are ∼30% smaller than wild-type cells, indicating that achievement of a particular cell size is not obligatory for initiation. Prompted by this finding, we re-examined the link between cell size and initiation in both E. coli and B. subtilis. Although changes in DNA replication have been shown to alter both E. coli and B. subtilis cell size, the converse (the effect of cell size on DNA replication) has not been explored. Here, we report that the mechanisms responsible for coordinating DNA replication with cell size vary between these two model organisms. In contrast to B. subtilis, small E. coli mutants delayed replication initiation until they achieved the size at which wild-type cells initiate. Modest increases in DnaA alleviated the delay, supporting the view that growth-dependent accumulation of DnaA is the trigger for replication initiation in E. coli. Significantly, although small E. coli and B. subtilis cells both maintained wild-type concentration of DnaA, only the E. coli mutants failed to initiate on time. Thus, rather than the concentration, the total amount of DnaA appears to be more important for initiation timing in E. coli. The difference in behavior of the two bacteria appears to lie in the mechanisms that control the activity of DnaA

Classification and evolutionary history of the single-strand annealing proteins, RecT, Redβ, ERF and RAD52

BACKGROUND: The DNA single-strand annealing proteins (SSAPs), such as RecT, Redβ, ERF and Rad52, function in RecA-dependent and RecA-independent DNA recombination pathways. Recently, they have been shown to form similar helical quaternary superstructures. However, despite the functional similarities between these diverse SSAPs, their actual evolutionary affinities are poorly understood. RESULTS: Using sensitive computational sequence analysis, we show that the RecT and Redβ proteins, along with several other bacterial proteins, form a distinct superfamily. The ERF and Rad52 families show no direct evolutionary relationship to these proteins and define novel superfamilies of their own. We identify several previously unknown members of each of these superfamilies and also report, for the first time, bacterial and viral homologs of Rad52. Additionally, we predict the presence of aberrant HhH modules in RAD52 that are likely to be involved in DNA-binding. Using the contextual information obtained from the analysis of gene neighborhoods, we provide evidence of the interaction of the bacterial members of each of these SSAP superfamilies with a similar set of DNA repair/recombination protein. These include different nucleases or Holliday junction resolvases, the ABC ATPase SbcC and the single-strand-binding protein. We also present evidence of independent assembly of some of the predicted operons encoding SSAPs and in situ displacement of functionally similar genes. CONCLUSIONS: There are three evolutionarily distinct superfamilies of SSAPs, namely the RecT/Redβ, ERF, and RAD52, that have different sequence conservation patterns and predicted folds. All these SSAPs appear to be primarily of bacteriophage origin and have been acquired by numerous phylogenetically distant cellular genomes. They generally occur in predicted operons encoding one or more of a set of conserved DNA recombination proteins that appear to be the principal functional partners of the SSAPs