Complete mitochondrial genome of six Cheilinusundulatus (Napoleon Wrasse): an endangeredmarine fish species from Sabah, Malaysia

We report here the complete mitochondrial (mt) genomes of six individuals of Cheilinus undulatus (Napoleon Wrasse), an endangered marine fish species. The six mt DNA sequences had an average size of 17,000 kb and encoded 22 tRNA, two sRNA, 13 highly conserved protein coding genes and a control region. The polymorphic variation (control region) in these six individuals suggests their potential use as a specific marker for phylogeographic conservation. Moreover, the sequence polymorphism within the control region (D-loop) suggests that this locus can be applied for phylogenetic studies

Preliminary result of population structure of reef fishes in coral reef restoration sites in Tun Sakaran Marine Park, Semporna, Sabah

Restoration of coral reefs at the Tun Sakaran Marine Park (TSMP) started in 2009. Various methods are adopted, although the Coral Frame method is preferred mainly due to the low maintenance cost and its durability and is currently still being used. However, since the beginning of its deployment, there has been little study on the effectiveness of the coral restoration project. Thus, this study was conducted to determine the population structure of indicator coral reef fish around the coral frames. Two study sites (Site 1: Bohey Dulang; Site 2: Mantabuan) with existing coral frames within the TSMP were selected. At each site, a baited remote underwater video system (BRUVS), was deployed, and each was set to capture approximately one-hour footage. The first BRUVS deployment of this 24-month project was made on 21 July 2020, during the peak of the Southwest Monsoon. A total of 20 families (32 species) and 19 families (42 species) were recorded at Site 1 and Site 2, respectively. The Small-tooth whiptail, Pentapodus caninus (MaxN:14) and fusilier, Caesio sp. (MaxN: 101) are the most abundant species at Site 1 and Site 2, respectively. The preliminary findings reveal a low abundance and diversity counts of indicator reef fish (Serranidae, Labridae, Scaridae and Lutjanidae) at the coral restoration sites within TSMP. However, it is suspected that opportunistic local fishermen try their luck to fish in restricted parts of the park (pers. Observ.), while local fishermen try to play the game of 'mouse and cat' with the Park's Law Enforcement

Growth and Mortality of Green Mussel Perna viridis Farmed at Ambong Bay and Marudu Bay, Sabah, Malaysia

Asian green mussel is commercially farmed in tidal waters in several enclosed bays in Sabah, Malaysia. In this study, two areas on the west coast of Sabah – Ambong Bay and Marudu Bay – were selected for the monitoring of the growth and mortality rates of green mussels farmed in suspension raft. Both growth and survival rates were then correlated with physicochemical parameters (dissolved oxygen, pH, salinity, temperature, water transparency, chlorophyll-a), nutrients (phosphate (PO43-), ammonia (NH3-N), nitrate (NO3-N) and nitrite (NO2-N) and condition index of mussel from each study site, as well as between the study sites. The twelve-month growth study (September 2017 to August 2018) was started with a total of 180 mussel specimens (90 at each site). The initial size (mean) of the mussel seed used was 47.7 ± 3.5 mm and 51.1 ± 3.9 mm for Marudu Bay and Ambong Bay, respectively. Mussels in Marudu Bay attained mean size of 73.47 ± 11.05 mm (SGR 0.17% ± 0.22) compared to 64.05 ± 7.44 mm (SGR 0.11% ± 0.22) for Ambong Bay at the end of the experiment. The cumulative mortality rates were 9.2% ± 4.9 and 55.5% ± 30.0 for Marudu Bay and Ambong Bay, respectively. The Pearson correlation indicated a significant positive relationship between mortality and water transparency (r = 0.684, p<0.01). There was a significant negative relationship between ammonia in seawater and mussel mortality (r = -0.561, p<0.01), as well as significant negative relationships between nitrate and growth (r = -0.480, p<0.05) and mortality (r = -0.460, p<0.05), as indicated by Spearman’s Rank-order Correlation analysis. Overall, the growth performance of green mussels farmed in Marudu Bay was better than in Ambong Bay, however, the mortality of mussels in Ambong Bay was higher

A revised classification of the family Dasyatidae (Chondrichthyes: Myliobatiformes) based on new morphological and molecular insights

Last, Peter R., Naylor, Gavin J. P., Manjaji-Matsumoto, B. Mabel (2016): A revised classification of the family Dasyatidae (Chondrichthyes: Myliobatiformes) based on new morphological and molecular insights. Zootaxa 4139 (3): 345-368, DOI: http://doi.org/10.11646/zootaxa.4139.3.

Checklist of coral reef fishes of Darvel Bay, Sabah, Malaysian Coral Triangle, with a note on the biodiversity and community structure

The Darvel Bay is a large semi-enclosed bay with spectacular natural land and seascape. The inward side of the Bay has only been recently known to be an important foraging ground for the endangered, threatened and protected (ETP) elasmobranch species, such as the Whale Shark and mobulid rays. Following a recent scientific expedition, we present a checklist of the coral reef fishes of Darvel Bay. A note on the biodiversity and community structure is presented, based on our analysis using diversity indices, univariate and multivariate approaches. Seven natural coral reefs comprising two fringing reefs and five patch reefs, were surveyed at 10 m depth using underwater visual census (UVC) and baited remote underwater video station (BRUVS) methods. A diverse list of 66 species of reef fishes from 17 families is recorded. However, this is overwhelmingly dominated by the small-sized omnivorous damselfish, family Pomacentridae (62%; N = 1485 individuals). Species richness and abundance were observed to increase at sites surveyed furthest from the coast within the Bay. Significantly distinct reef fish assemblages were observed between three priori groups, based on proximity to shore (ANOSIM, R = 0.65, p < 0.05). SIMPER analysis further revealed that 22 species of the total reef fish species recorded drive 76% dissimilarities between the groups. The pattern of the reef fish communities observed, reflected as a logseries distribution model, is that commonly found in disturbed habitats or habitats characterised by restricted resources in a community, where the dominant species takes up a high proportion of available resources. The ecological indices (Shannon-Wiener Diversity Index, 2.05; Simpson Index of Diversity, 0.79; Simpson Dominance Index, 0.20; and Pielou’s Evenness Index, 0.43), all reflect the relatively low diversity and uneven species distribution of the reef fish community. We conclude that the present status of the coral reef fish community dominating Darvel Bay as having undergone a rapid shift in structure following intense and rampant fishing pressure, as reported by the media

Determining tourist’s carrying capacity based on ecological approach in Tunku Abdul Rahman Park, Malaysia

Tunku Abdul Rahman Park (TARP) is a Marine Protected Area (MPA) and a famous tourist destination in Sabah. The possible long-term negative impacts on the ecology and sustainability of the Park due to the very high number of tourists is of much concern to the Park management authority. This study was conducted to determine the ecological and tourism carrying capacity in three islands in TARP, Manukan, Mamutik and Sapi islands. The Effective Carrying Capacity (ECC) concept is applied in this study, in which the results are expected to provide the Park Authority with data and effective management actions. Calculation of carrying capacity in this study was based on three distinct visiting patterns or seasons: i) Regular season; ii) High season, and iii) Festive season in order to ensure optimal tourists ‘satisfaction and revenue, while still maintaining ecological sustainability was calculated after considering the various limitations imposed by physical, climate, ecological, and management capabilities. Land and ocean areas were considered and calculated separately as they occupied different variables. Our findings showed that Manukan island recorded the highest ECC, while Mamutik and Sapi island shared almost similar ECC value. Optimization of Carrying Capacity (CC) in different seasons was also achieved with a few Correction Factor (CF) adjustments. It shows that Festive season recorded the highest ECC, followed by High Season and Regular Season. The ECC obtained was suggested to be implemented to TARP management as to preserve and sustain the ecological value of the Park

Comparative phylogeography of the Coral Triangle and implications for marine management

Extreme concentration of marine biodiversity and exploitation of marine resources in the Coral Triangle pose challenges to biogeographers and resource managers. Comparative phylogeography provides a powerful tool to test biogeographic hypotheses evoked to explain species richness in the Coral Triangle. It can also be used to delineate management units for marine resources. After about a decade of phylogeographical studies, patterns for the Coral Triangle are emerging. Broad connectivity in some species support the notion that larvae have maintained gene flow among distant populations for long periods. Other phylogeographic patterns suggest vicariant events resulting from Pleistocene sea level fluctuations, which have, at least occasionally, resulted in speciation. Divergence dates ranging back to the Miocene suggest that changing land configurations may have precipitated an explosion of species diversification. A synthesis of the marine phylogeographic studies reveals repeated patterns that corroborate hypothesized biogeographic processes and suggest improved management schemes for marine resources. © Copyright 2011 Kent E. Carpenter et al

Citizen science sheds light on the cryptic ornate eagle ray Aetomylaeus vespertilio

1. The ornate eagle ray Aetomylaeus vespertilio (Bleeker, 1852) is a rare and Endangered species of eagle ray, with a patchy distribution across the Indo‐West Pacific region, for which data are scarce. 2. Citizen science‐sourced data from online social media platforms were used to shed light on the distribution and ecology of the ornate eagle ray. 3. A total of 53 reports of A. vespertilio were found on Facebook, Instagram, Twitter, and YouTube, including four reports of dead specimens. All live reports occurred in shallow reef or lagoon ecosystems. Two individual A. vespertilio specimens were re‐sighted in the same general area following initial identification within 9 and 13 months at Ningaloo Reef and at Lady Elliot Island, Australia, respectively, as confirmed through their dorsal spot patterns. One report was at Richard's Bay in South Africa, the southernmost known location for this species in the Indian Ocean (28°S). Live reports were also reported from the Maldives, the Seychelles, Egypt (Red Sea), Philippines, Palau, and elsewhere on the Great Barrier Reef, Australia. 4. Results indicate that citizen‐collected data can shed light on the occurrence and distribution of cryptic species, as well as complement monitoring programmes