A conditional compression distance that unveils insights of the genomic evolution

We describe a compression-based distance for genomic sequences. Instead of using the usual conjoint information content, as in the classical Normalized Compression Distance (NCD), it uses the conditional information content. To compute this Normalized Conditional Compression Distance (NCCD), we need a normal conditional compressor, that we built using a mixture of static and dynamic finite-context models. Using this approach, we measured chromosomal distances between Hominidae primates and also between Muroidea (rat and mouse), observing several insights of evolution that so far have not been reported in the literature.Comment: Full version of DCC 2014 paper "A conditional compression distance that unveils insights of the genomic evolution

Otolith morphology of Nezumia sclerorhynchus and Nezumia aequalis (Macrouridae): a useful tool to species identification and ecological studies

Bol. Mus. Mun. Funchal, Sup. N.º 6: 205-212, 2001Otoliths of Nezumia sclerorhynchus and N. aequalis are described and compared. When studying the marine trophic relationships, its general shape and morphometry allows one to separated these two sympatric species.São descritos e comparados os otólitos sagitta de Nezumia sclerorhynchus e de N. aequalis. No estudo das relações tróficas marinhas a sua forma e morfometria permitem distinguir qual destas duas espécies simpátricas foi predada

The impact of the oil spill of the tanker “Aragon” on the littoral fish fauna of Porto Santo (NE Atlantic Ocean) in 1991 and ten years later

Bocagiana, 217: 1-8Em Janeiro de 1990, a Ilha de Porto Santo (Arquipélago da Madeira), foi atingida por uma maré negra proveniente de um derrame do navio petroleiro “Aragon”. Um ano depois, avaliou-se a ictiofauna costeira. Dez anos depois da maré negra, uma nova amostragem foi realizada com a mesma metodologia, de forma a comparar com os dados recolhidos anteriormente. A análise dos resultados obtidos parece revelar que os efeitos da maré negra nos peixes litorais foram reduzidos. Este trabalho constitui a primeira contribuição para a “check-list” da ictiofauna costeira da Ilha de Porto Santo.In January 1990, the tanker “Aragon” oil spill reached Porto Santo Island (Madeira Archipelago). One year later, in 1991 the littoral fish fauna was evaluated. Ten years after the “Aragon” oil spill, a new survey was made using the same methods, to compare data. From the results it seems that the effects of the oil were rather small. As a result of this work, as a check-list of the littoral fish fauna of this Island is presented