Additional file 1: Table S1. of Risk factors for delay in age-appropriate vaccinations among Gambian children

Risk factors for delay in receipt of BCG and DPT3 vaccine. Table S2. Risk factors for delay in receipt of measles and delay of any vaccines. (DOCX 24 kb

MOESM5 of Exceptionally long-range haplotypes in Plasmodium falciparum chromosome 6 maintained in an endemic African population

Additional file 5. Linkage disequilibrium map for 13 microsatellite loci across 179.5 kb of P. falciparum chromosome 6. Each plot presents data from a single population labelled at the top left of the plot panel with the year the isolates were collected. Loci are labelled at the top of each plot. Boxes in each plot represents LD between loci in blue or red indicating non-significant or highly significant r2 values between alleles of the loci. More intense colours represent extreme values of significance

<i>H. pylori</i> strains and populations selected for comparison with 46 Gambian strains.

<p><i>H. pylori</i> strains and populations selected for comparison with 46 Gambian strains.</p

STRUCTURE analysis of 46 Gambian strains in relation to a representative sample of the global diversity in <i>H. pylori</i>.

<p>Gambian <i>H. pylori</i> were compared with strains from other previously assigned populations using no-admixture model (3A) and the linkage model (3B). Population are colour coded according to <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0109466#pone-0109466-g002" target="_blank">Figure 2</a>. Each line represents an isolate and colours indicate its inferred modern (3A) or ancestral population(s) (3B).</p

Evolutionary relationships among a global sample of <i>H. pylori</i> strains.

<p>The neighbor-joining tree was calculated from concatenated sequences of 246 globally representative <i>H. pylori</i> strains downloaded from MLST website (<a href="http://Http://pubmlst.org/Helicobacter" target="_blank">Http://pubmlst.org/Helicobacter</a>) plus the 46 isolates studied here. Strains were colour-coded by population as follows: blue, hpAfrica1; light green, hpNEAfrica; dark green, hpEurope; grey, hpAsia2; purple, hpSahul; olive, hpEastAsia; red, hpAfrica2.</p

Risk factors of <i>P</i>. <i>falciparum</i> infection at the start of the transmission season.

<p>Risk factors of <i>P</i>. <i>falciparum</i> infection at the start of the transmission season.</p

<i>An</i>. <i>gambiae s</i>.<i>l</i>. indoor and outdoor biting patterns across study sites.

<p><i>An</i>. <i>gambiae s</i>.<i>l</i>. indoor and outdoor biting patterns across study sites.</p

Risk factors for ≥ 2 episodes of malaria infection.

<p>Risk factors for ≥ 2 episodes of malaria infection.</p

Study flow chart.

<p>The total follow-up time was 1,592.5 person years at risk (PYAR). The median age was 13 years (Inter-quartile range (IQR) 5, 28; range 6 months-90 years). LLINs ownership was high (71.49%, 2766/3869) and their use varied significantly by month, with July, at the start of the transmission season, having the lowest proportion (52.22%, 1916/3669), and increasing significantly from August (87.05%, 2811/3229) to October (94.04%, 2809/2987), p<0.01 (<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0187059#pone.0187059.g002" target="_blank">Fig 2</a>).</p

Variation <i>An</i>. <i>gambiae s</i>.<i>l</i> species composition across the transmission season.

<p>Vector parity was significantly higher in URR-S and URR-N than in the other 4 regions (<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0187059#pone.0187059.t011" target="_blank">Table 11</a>).</p