Additional file 2: of Intestinal Candida parapsilosis isolates from Rett syndrome subjects bear potential virulent traits and capacity to persist within the host

Figure S1. Relative abundances of Candida albicans and Candida parapsilosis isolates in Rett syndrome subjects (RTT) and healthy controls (HC). The total abundance of all the other fungal isolates is also reported as “other species” (PDF 22 kb

Additional file 6: of Intestinal Candida parapsilosis isolates from Rett syndrome subjects bear potential virulent traits and capacity to persist within the host

Figure S5. Percentage of positive T-cells to T-bet, RORγt and both transcription factors T-bet and RORγt, as measured by intracellular staining and flow cytometry of PBMCs stimulated with a, b, c) C. parapsilosis isolates and d, e, f) C. albicans isolates from HC and RTT subjects. Cells were gated for CD4+ and data are given as percentage of total gated CD4+ cells. (PDF 41 kb

Additional file 5: Table S4. of New evidences on the altered gut microbiota in autism spectrum disorders

Mean relative abundance (%) ± standard deviation (SD) of bacterial taxa at genus levels in autistic (AD) subjects and neurotypical (NT) controls subjects both constipated (C) and non-constipated (NC). (PDF 303 kb

Additional file 13: Table S5. of Altered gut microbiota in Rett syndrome

Statistics of the significantly different metabolic pathways (KEGG categories) inferred with PICRUSt in the gut microbiota of healthy controls (HC) and Rett syndrome (RTT) subjects (Welch’s t test, p < 0.05 FDR-corrected) from 16S rDNA data. (DOCX 26 kb

Additional file 11: Figure S7. of Altered gut microbiota in Rett syndrome

Bacterial taxa which relative abundances were significantly different (p < 0.05; Wilcoxon rank-sum test) between healthy controls (HC) and Rett syndrome (RTT) subjects. (PDF 319 kb

Additional file 4: Figure S2. of Altered gut microbiota in Rett syndrome

Measures of bacterial diversity. a) Alpha-diversity estimated on the Chao1 estimator and the Shannon entropy; ***, p < 0.001; **, p < 0.01; *, p < 0.05; Wilcoxon rank-sum test. b) PCoA plot based on the unweighted UniFrac distance among samples analysed according to individuals’ health status. Constipated Rett syndrome subjects (RTT-C), non-constipated Rett syndrome subjects (RTT-NC) and healthy controls (HC) are coloured in red, orange or green, respectively. (PDF 58 kb