Complete Genome Sequence of the Type Strain Corynebacterium testudinoris DSM 44614, Recovered from Necrotic Lesions in the Mouth of a Tortoise

The complete genome sequence of the type strain Corynebacterium testudinoris DSM 44614 from the mouth of a tortoise comprises 2,721,226 bp with a mean G+C content of 63.14%. The automatic annotation of the genome sequence revealed 4 rRNA operons, 51 tRNA genes, 7 other RNA genes, and 2,561 protein-coding regions.Medical Microbiology and Genomics fund (eKVV 200937)Germany. Federal Ministry of Education and Research (German Network for Bioinformatics Intrastructure Initiative FKZ 031A533A

Graded inhibition of oncogenic Ras-signaling by multivalent Ras-binding domains

BACKGROUND: Ras is a membrane-associated small G-protein that funnels growth and differentiation signals into downstream signal transduction pathways by cycling between an inactive, GDP-bound and an active, GTP-bound state. Aberrant Ras activity as a result of oncogenic mutations causes de novo cell transformation and promotes tumor growth and progression. RESULTS: Here, we describe a novel strategy to block deregulated Ras activity by means of oligomerized cognate protein modules derived from the Ras-binding domain of c-Raf (RBD), which we named MSOR for multivalent scavengers of oncogenic Ras. The introduction of well-characterized mutations into RBD was used to adjust the affinity and hence the blocking potency of MSOR towards activated Ras. MSOR inhibited several oncogenic Ras-stimulated processes including downstream activation of Erk1/2, induction of matrix-degrading enzymes, cell motility and invasiveness in a graded fashion depending on the oligomerization grade and the nature of the individual RBD-modules. The amenability to accurate experimental regulation was further improved by engineering an inducible MSOR-expression system to render the reversal of oncogenic Ras effects controllable. CONCLUSION: MSOR represent a new tool for the experimental and possibly therapeutic selective blockade of oncogenic Ras signals

Interaction between regional temperature and shade level shapes saproxylic beetle communities

AimThe 'concept of relative constancy of habitats' assumes that species differ in their habitat preferences depending on the regional temperature so that all populations experience similar microclimatic conditions. Our aim was to assess the relevance of this concept by disentangling the effects of shade level and regional temperature on southern and northern distributed saproxylic (=dead wood dependent) beetle species.LocationSweden.MethodsWe established a field experiment by placing 435 logs of Norway spruce (Picea abies) along shade gradients in six regions differing in regional temperature (along a 1200 km latitudinal gradient). For each log, we sampled the saproxylic beetle community and calculated the Community Temperature Index (CTI), indicating to what extent the community is dominated by southern or northern species.ResultsSpecies richness and total abundance were better explained by shade level, whereas species composition was better explained by study region. In colder regions, CTI varied along the shade gradient, whereas in warmer regions, CTI was more similar along the shade gradient. Moreover, in colder regions, the number of southern species was higher in sun-exposed logs, whereas in warmer regions, the number of southern species was higher in shaded logs. This supports the concept of relative constancy of habitats. In contrast, northern species preferred shaded conditions regardless of the regional temperature.Main ConclusionsRegional temperature, shade level and resulting microclimate are important drivers of species richness, total abundance and composition. Occurrence patterns of saproxylic beetle species follow to some extent the concept of relative constancy of habitats since their habitat preferences vary with regional temperature. Northern species are of conservation concern due to disadvantages by climate warming and clear-cutting. They are favoured by preserving forests with rarely disturbed canopies

Virulence Factor Genes Detected in the Complete Genome Sequence of Corynebacterium uterequi DSM 45634, Isolated from the Uterus of a Maiden Mare

The complete genome sequence of the type strain Corynebacterium uterequi DSM 45634 from an equine urogenital tract specimen comprises 2,419,437 bp and 2,163 protein-coding genes. Candidate virulence factors are homologs of DIP0733, DIP1281, and DIP1621 from Corynebacterium diphtheriae and of sialidase precursors from Trueperella pyogenes and Chlamydia trachomatis.Medical Microbiology and Genomics fund (eKVV 200937)Germany. Federal Ministry of Education and Research (German Network for Bioinformatics Intrastructure Initiative FKZ 031A533A

Learning to diagnose collaboratively – Effects of adaptive collaboration scripts in agent-based medical simulations

We investigated how medical students' collaborative diagnostic reasoning, particularly evidence elicitation and sharing, can be facilitated effectively using agent-based simulations. Providing adaptive collaboration scripts has been suggested to increase effectiveness, but existing evidence is diverse and could be affected by unsystematic group constellations. Collaboration scripts have been criticized for undermining learners' agency. We investigate the effect of adaptive and static scripts on collaborative diagnostic reasoning and basic psychological needs. We randomly allocated 160 medical students to one of three groups: adaptive, static, or no collaboration script. We found that learning with adaptive collaboration scripts enhanced evidence sharing performance and transfer performance. Scripting did not affect learners’ perceived autonomy and social relatedness. Yet, compared to static scripts, adaptive scripts had positive effects on perceived competence. We conclude that for complex skills complementing agent-based simulations with adaptive scripts seems beneficial to help learners internalize collaboration scripts without negatively affecting basic psychological needs

Management of the phosphorus-cladophora dynamic at a site on lake Ontario using a multi-module bioavailable P model

The filamentous green alga Cladophora grows to nuisance proportions in Lake Ontario. Stimulated by high phosphorus concentrations, nuisance growth results in the degradation of beaches and clogging of industrial water intakes with attendant loss of beneficial uses. We develop a multi-module bioavailable phosphorus model to examine the efficacy of phosphorus management strategies in mitigating nuisance algal growth. The model platform includes modules simulating hydrodynamics (FVCOM), phosphorus-phytoplankton dynamics (GEM) and Cladophora growth (GLCMv3). The model is applied along a 25 km stretch of the Lake Ontario nearshore, extending east from Toronto, ON and receiving effluent from three wastewater treatment plants. Simulation results identify the Duffin Creek wastewater treatment plant effluent as a driving force for nuisance conditions of Cladophora growth, as reflected in effluent bioavailable phosphorus concentrations and the dimensions of the plant’s phosphorus footprint. Simulation results demonstrate that phosphorus removal by chemically enhanced secondary treatment is insufficient to provide relief from nuisance conditions. Tertiary treatment (chemically enhanced secondary treatment with ballasted flocculation) is shown to eliminate phosphorus-saturated conditions associated with the Duffin Creek wastewater treatment plant effluent, providing local relief from nuisance conditions. Management guidance presented here has wider application at sites along the highly urbanized Canadian nearshore of Lake Ontario

Influence of Measurement Depth and Acquisition Parameters on Shear Wave Speed and Shear Wave Dispersion in Certified Phantoms Using a Canon Aplio Clinical Ultrasound Scanner

OBJECTIVE The aim of the work described here was to investigate the relative contribution of confounding factors on liver shear wave speed (SWS) and shear wave dispersion slope (SWDS) measurements in three certified phantoms using a Canon Aplio clinical ultrasound scanner. METHODS A Canon Aplio i800 i-series ultrasound system (Canon Medical Systems Corporation, Otawara, Tochigi, Japan) with i8CX1 convex array (center frequency = 4 MHz) was used to examine dependencies caused by the depth, width and height of the acquisition box (AQB), the depth and size of the region of interest (ROI), the AQB angle and the pressure of the ultrasound probe on the surface of the phantom. RESULTS Results revealed that depth is the most significant confounder in both SWS and SWDS measurements. AQB angle, height and width and ROI size exhibited minimal confounding effects on measurements. For SWS, the most consistent measurement depth is when the top of the AQB is placed between 2 and 4 cm, and the ROI is located between 3 and 7 cm deep. For SWDS, results indicate that measurement values significantly decrease with depth from the surface of the phantom until approximately 7 cm deep, and consequently no stable area of AQB placement or ROI depth exists. CONCLUSION In contrast to SWS, the same ideal acquisition depth range cannot necessarily be applied to SWDS measurements because of a significant depth dependency