Transition stages of Rayleigh–Taylor instability between miscible fluids

Direct numerical simulations (DNS) are presented of three-dimensional, Rayleigh–Taylor instability (RTI) between two incompressible, miscible fluids, with a 3:1 density ratio. Periodic boundary conditions are imposed in the horizontal directions of a rectangular domain, with no-slip top and bottom walls. Solutions are obtained for the Navier–Stokes equations, augmented by a species transport-diffusion equation, with various initial perturbations. The DNS achieved outer-scale Reynolds numbers, based on mixing-zone height and its rate of growth, in excess of 3000. Initial growth is diffusive and independent of the initial perturbations. The onset of nonlinear growth is not predicted by available linear-stability theory. Following the diffusive-growth stage, growth rates are found to depend on the initial perturbations, up to the end of the simulations. Mixing is found to be even more sensitive to initial conditions than growth rates. Taylor microscales and Reynolds numbers are anisotropic throughout the simulations. Improved collapse of many statistics is achieved if the height of the mixing zone, rather than time, is used as the scaling or progress variable. Mixing has dynamical consequences for this flow, since it is driven by the action of the imposed acceleration field on local density differences

Coccidia (Apicomplexa: Eimeriidae) Infecting Cricetid Rodents from Alaska, U.S.A., and Northeastern Siberia, Russia, and Description of a New \u3ci\u3eEimeria\u3c/i\u3e Species from \u3ci\u3eMyodes rutilus\u3c/i\u3e, the Northern Red-Backed Vole

During the summers of 2000, 2001, and 2002, 1,950 fecal samples from 4 families, 10 genera, and 16 species of rodents in Alaska, U.S.A. (N = 1,711), and Siberia, Russia (N = 239) were examined for coccidia (Apicomplexa: Eimeriidae). The 4 families sampled were Dipodidae (jumping mice), Erethizontidae (New World porcupines), Muridae (mice, rats), and Cricetidae (voles, lemmings). Nineteen oocyst morphotypes were observed, of which 10 were consistent with descriptions of known coccidia species from murid hosts, 8 were similar to oocysts described previously from other genera than those in which they are found here (and are called Eimeria species 1-8), and 1 is described as new. In the Dipodidae, all from Alaska, 0/15 Zapus hudsonius had coccidian oocysts in their feces when examined. In the Erethizontidae, all from Alaska, 0/5 Erethizon dorsatum had oocysts when examined. In the Muridae, all from Russia, 0/5 Apodemus peninsulae had oocysts when examined. In the Cricetidae from Alaska, we found the following infections: 15/72 (21%) Lemmus trimucronatus,/i\u3e (Eimeria spp. 3, 4, 5); 10/29 (34%) Microtus longicaudus (Eimeria saxei, Eimeria wenrichi); 41/88 (47%) Microtus miurus (Eimeria coahiliensis, Eimeria ochrogasteri, Eimeria saxei, Eimeria wenrichi); 278/405 (68%) Microtus oeconomus (E. ochrogasteri, E. saxei, E. wenrichi); 116/159 (73%) Microtus pennsylvanicus (E. saxei, E. wenrichi); 9/52 (17%) Microtus xanthognathus (E. wenrichi); 218/699 (31%) Myodes rutilus (Eimeria cernae, Eimeria gallati, Eimeria marconii, Isospora clethrionomydis, Isospora clethrionomysis, and a new Eimeria species); 34/187 (18%) Synaptomys borealis (Eimeria spp. 6, 7, 8, Eimeria synaptomys). In the Cricetidae from Siberia, we found the following infections: 5/24 (21%) Alticola macrotis (Eimeria spp.1, 2); 0/5 Dicrostonyx torquatus; 1/11 (9%) Lemmus lemmus (Eimeria sp. 3); 30/48 (52%) Mi. oeconomus (E. saxei, E. wenrichi); 5/53 (9%) Myodes rufocanus (E. cernae, E. gallati, I. clethrionomydis, the new Eimeria sp.); 21/85 (25%) Myodes rutilus (E. cernae, E. gallati, E. marconii, the new Eimeria sp.); 0/8 Myopus schisticolor. Oocysts of the new species, found in both My. rutilus (Alaska, Siberia) and My. rufocanus (Siberia), are ellipsoidal with a striated outer wall and measured 30.6 × 20.5 (27–33 × 19–23) μm; micropyle and oocyst residuum absent, but a polar granule is present. Sporocysts are ellipsoidal, 14.5 × 9.1 (13–16 × 8–10) μm; Stieda body, sub-Stieda body and sporocyst residuum are present

Collisions of boosted black holes: perturbation theory prediction of gravitational radiation

We consider general relativistic Cauchy data representing two nonspinning, equal-mass black holes boosted toward each other. When the black holes are close enough to each other and their momentum is sufficiently high, an encompassing apparent horizon is present so the system can be viewed as a single, perturbed black hole. We employ gauge-invariant perturbation theory, and integrate the Zerilli equation to analyze these time-asymmetric data sets and compute gravitational wave forms and emitted energies. When coupled with a simple Newtonian analysis of the infall trajectory, we find striking agreement between the perturbation calculation of emitted energies and the results of fully general relativistic numerical simulations of time-symmetric initial data.Comment: 5 pages (RevTex 3.0 with 3 uuencoded figures), CRSR-107

A systematic review of the use of an expertise-based randomised controlled trial design

Acknowledgements JAC held a Medical Research Council UK methodology (G1002292) fellowship, which supported this research. The Health Services Research Unit, Institute of Applied Health Sciences (University of Aberdeen), is core-funded by the Chief Scientist Office of the Scottish Government Health and Social Care Directorates. Views express are those of the authors and do not necessarily reflect the views of the funders.Peer reviewedPublisher PD

A nematode demographics assay in transgenic roots reveals no significant impacts of the Rhg1 locus LRR-Kinase on soybean cyst nematode resistance

<p>Abstract</p> <p>Background</p> <p>Soybean cyst nematode (<it>Heterodera glycines</it>, SCN) is the most economically damaging pathogen of soybean (<it>Glycine max</it>) in the U.S. The <it>Rhg1 </it>locus is repeatedly observed as the quantitative trait locus with the greatest impact on SCN resistance. The Glyma18g02680.1 gene at the <it>Rhg1 </it>locus that encodes an apparent leucine-rich repeat transmembrane receptor-kinase (LRR-kinase) has been proposed to be the SCN resistance gene, but its function has not been confirmed. Generation of fertile transgenic soybean lines is difficult but methods have been published that test SCN resistance in transgenic roots generated with <it>Agrobacterium rhizogenes</it>.</p> <p>Results</p> <p>We report use of artificial microRNA (amiRNA) for gene silencing in soybean, refinements to transgenic root SCN resistance assays, and functional tests of the <it>Rhg1 </it>locus LRR-kinase gene. A nematode demographics assay monitored infecting nematode populations for their progress through developmental stages two weeks after inoculation, as a metric for SCN resistance. Significant differences were observed between resistant and susceptible control genotypes. Introduction of the <it>Rhg1 </it>locus LRR-kinase gene (genomic promoter/coding region/terminator; Peking/PI 437654-derived SCN-resistant source), into <it>rhg1</it>^-SCN-susceptible plant lines carrying the resistant-source <it>Rhg4</it>^{<it>+ </it>}locus, provided no significant increases in SCN resistance. Use of amiRNA to reduce expression of the LRR-kinase gene from the <it>Rhg1 </it>locus of Fayette (PI 88788 source of <it>Rhg1</it>) also did not detectably alter resistance to SCN. However, silencing of the LRR-kinase gene did have impacts on root development.</p> <p>Conclusion</p> <p>The nematode demographics assay can expedite testing of transgenic roots for SCN resistance. amiRNAs and the pSM103 vector that drives interchangeable amiRNA constructs through a soybean polyubiqutin promoter (Gmubi), with an intron-GFP marker for detection of transgenic roots, may have widespread use in legume biology. Studies in which expression of the <it>Rhg1 </it>locus LRR-kinase gene from different resistance sources was either reduced or complemented did not reveal significant impacts on SCN resistance.</p

The Star Formation History of LGS 3

We have determined the distance and star formation history of the Local Group dwarf galaxy LGS 3 from deep Hubble Space Telescope WFPC2 observations. LGS 3 is intriguing because ground-based observations showed that, while its stellar population is dominated by old, metal-poor stars, there is a handful of young, blue stars. Also, the presence of HI gas makes this a possible ``transition object'' between dwarf spheroidal and dwarf irregular galaxies. The HST data are deep enough to detect the horizontal branch and young main sequence for the first time. A new distance of D=620+/-20 kpc has been measured from the positions of the TRGB, the red clump, and the horizontal branch. The mean metallicity of the stars older than 8 Gyr is Fe/H = -1.5 +/- 0.3. The most recent generation of stars has Fe/H ~ -1. For the first few Gyr the global star formation rate was several times higher than the historical average and has been fairly constant since then. However, we do see significant changes in stellar populations and star formation history with radial position in the galaxy. Most of the young stars are found in the central 63 pc (21''), where the star formation rate has been relatively constant, while the outer parts have had a declining star formation rate.Comment: To appear in The Astrophysical Journal, 26 pages, 14 figures, uses AASTe

Scaling the Incompressible Richtmyer-Meshkov Instability

We derive a scaling relation for Richtmyer-Meshkov instability of incompressible fluids. The relation is tested using both numerical simulations and experimental data. We obtain collapse of growth rates for a wide range of initial conditions by using vorticity and velocity scales associated with the interfacial perturbations and the acceleration impulse. A curve fit to the collapsed growth rates yields a fairly universal model for the mixing layer thickness versus time

The use of patient-reported outcome measures to guide referral for hip and knee replacement. Part 1: the development of an evidence based model linking pre-operative score to the probability of gaining benefit from surgery

Aims To calculate how the likelihood of obtaining measurable benefit from hip or knee arthroplasty varies with preoperative patient-reported scores. Methods Existing UK data from 222,933 knee and 209,760 hip arthroplasty patients were used to model an individual’s probability of gaining meaningful improvement after surgery based on their preoperative Oxford Knee or Hip Score (OKS/OHS). A clinically meaningful improvement after arthroplasty was defined as ≥ 8 point improvement in OHS, and ≥ 7 in OKS. Results The upper preoperative score threshold, above which patients are unlikely to achieve any meaningful improvement from surgery, is 41 for knees and 40 for hips. At lower scores, the probability of improvement increased towards a maximum of 88% (knee) and 95% for (hips). Conclusion By our definition of meaningful improvement, patients with preoperative scores above 41 (OKS) and 40 (OHS) should not be routinely referred to secondary care for possible arthroplasty. Using lower thresholds would incrementally increase the probability of meaningful benefit for those referred but will exclude some patients with potential to benefit. The findings are useful to support the complex shared decision-making process in primary care for referral to secondary care; and in secondary care for experienced clinicians counselling patients considering knee or hip arthroplasty, but should not be used in isolation

No Time for Dead Time: Timing analysis of bright black hole binaries with NuSTAR

Timing of high-count rate sources with the NuSTAR Small Explorer Mission requires specialized analysis techniques. NuSTAR was primarily designed for spectroscopic observations of sources with relatively low count-rates rather than for timing analysis of bright objects. The instrumental dead time per event is relatively long (~2.5 msec), and varies by a few percent event-to-event. The most obvious effect is a distortion of the white noise level in the power density spectrum (PDS) that cannot be modeled easily with the standard techniques due to the variable nature of the dead time. In this paper, we show that it is possible to exploit the presence of two completely independent focal planes and use the cross power density spectrum to obtain a good proxy of the white noise-subtracted PDS. Thereafter, one can use a Monte Carlo approach to estimate the remaining effects of dead time, namely a frequency-dependent modulation of the variance and a frequency-independent drop of the sensitivity to variability. In this way, most of the standard timing analysis can be performed, albeit with a sacrifice in signal to noise relative to what would be achieved using more standard techniques. We apply this technique to NuSTAR observations of the black hole binaries GX 339-4, Cyg X-1 and GRS 1915+105.Comment: 13 pages, 8 figures, submitted to Ap

Guidance of sentinel lymph node biopsy decisions in patients with T1-T2 melanoma using gene expression profiling.

AIM: Can gene expression profiling be used to identify patients with T1-T2 melanoma at low risk for sentinel lymph node (SLN) positivity? PATIENTS & METHODS: Bioinformatics modeling determined a population in which a 31-gene expression profile test predicted \u3c5% SLN positivity. Multicenter, prospectively-tested (n = 1421) and retrospective (n = 690) cohorts were used for validation and outcomes, respectively. RESULTS: Patients 55-64 years and ≥65 years with a class 1A (low-risk) profile had SLN positivity rates of 4.9% and 1.6%. Class 2B (high-risk) patients had SLN positivity rates of 30.8% and 11.9%. Melanoma-specific survival was 99.3% for patients ≥55 years with class 1A, T1-T2 tumors and 55.0% for class 2B, SLN-positive, T1-T2 tumors. CONCLUSION: The 31-gene expression profile test identifies patients who could potentially avoid SLN biopsy