1,727 research outputs found
Implications of avoiding overlap between training and testing data sets when evaluating genomic predictions of genetic merit
Activity Dependent Branching Ratios in Stocks, Solar X-ray Flux, and the Bak-Tang-Wiesenfeld Sandpile Model
We define an activity dependent branching ratio that allows comparison of
different time series . The branching ratio is defined as . The random variable is the value of the next signal given
that the previous one is equal to , so . If
, the process is on average supercritical when the signal is equal to
, while if , it is subcritical. For stock prices we find
within statistical uncertainty, for all , consistent with an ``efficient
market hypothesis''. For stock volumes, solar X-ray flux intensities, and the
Bak-Tang-Wiesenfeld (BTW) sandpile model, is supercritical for small
values of activity and subcritical for the largest ones, indicating a tendency
to return to a typical value. For stock volumes this tendency has an
approximate power law behavior. For solar X-ray flux and the BTW model, there
is a broad regime of activity where , which we interpret as an
indicator of critical behavior. This is true despite different underlying
probability distributions for , and for . For the BTW model the
distribution of is Gaussian, for sufficiently larger than one, and
its variance grows linearly with . Hence, the activity in the BTW model
obeys a central limit theorem when sampling over past histories. The broad
region of activity where is close to one disappears once bulk dissipation
is introduced in the BTW model -- supporting our hypothesis that it is an
indicator of criticality.Comment: 7 pages, 11 figure
DERIVING ECONOMIC VALUES FOR REACTION NORMS OF GROWTH IN PIGS
SUMMARY Slopes of reaction norm models, also called reaction norms (RN), are alternative traits used in animal breeding for selection of genotypes that perform more consistently across a range of environments. Environmental sensitivity is of economic importance when the environment where selection takes place differs considerably from the commercial environment of slaughter pigs. The position on the environmental trajectory where intercept of reaction norm models is defined influences the economic values (EV) for slope and intercept. This position has to correspond to the trait definitions of intercept and slope of reaction norm models used to estimate variance components. The magnitude of EV for RN depends on the difference between the selection and production environments and the EV for the trait of interest. Economic values for RN may be negative or positive depending on whether the production environment is below or above the selection environment. Non-linear EV for growth across the environmental trajectory had minimal impact on the EV for RN of growth. Further genetic and economic analyses of extensive industry data are required to better quantify the economic importance of RN in pig breeding. INTRODUCTION Reaction norms quantify genotype by environment interactions by describing the response of genotypes to varying environmental conditions It was the aim of this paper to discuss economic implications of genetic differences in environmental sensitivity and to define EV for RN when selection is in the average environment using growth rate of pigs as an example trait
Development of an index to rank dairy females on expected lifetime profit
peer-reviewedThe objective of this study was to develop an index to rank dairy females on expected profit for the remainder of their lifetime, taking cognizance of both additive and nonadditive genetic merit, permanent environmental effects, and current states of the animal including the most recent calving date and cow parity. The cow own worth (COW) index is intended to be used for culling the expected least profitable females in a herd, as well as inform purchase and pricing decisions for trading of females. The framework of the COW index consisted of the profit accruing from (1) the current lactation, (2) future lactations, and (3) net replacement cost differential. The COW index was generated from estimated performance values (sum of additive genetic merit, nonadditive genetic merit, and permanent environmental effects) of traits, their respective net margin values, and transition probability matrices for month of calving, survival, and somatic cell count; the transition matrices were to account for predicted change in a cow’s state in the future. Transition matrices were generated from 3,156,109 lactation records from the Irish national database between the years 2010 and 2013. Phenotypic performance records for 162,981 cows in the year 2012 were used to validate the COW index. Genetic and permanent environmental effects (where applicable) were available for these cows from the 2011 national genetic evaluations and used to calculate the COW index and their national breeding index values (includes only additive genetic effects). Cows were stratified per quartile within herd, based on their COW index value and national breeding index value. The correlation between individual animal COW index value and national breeding index value was 0.65. Month of calving of the cow in her current lactation explained 18% of the variation in the COW index, with the parity of the cow explaining an additional 3 percentage units of the variance in the COW index. Females ranking higher on the COW index yielded more milk and milk solids and calved earlier in the calving season than their lower ranking contemporaries. The difference in phenotypic performance between the best and worst quartiles was larger for cows ranked on COW index than cows ranked on the national breeding index. The COW index is useful to rank females before culling or purchasing decisions on expected profit and is complementary to the national breeding index, which identifies the most suitable females for breeding replacements
f [N pi N]: from quarks to the pion derivative coupling
We study the N pi N coupling, in the framework of a QCD-inspired confining
Nambu-Jona-Lasinio model. A simple relativistic confining and instantaneous
quark model is reviewed. The Salpeter equation for the nucleon and the boosted
pion is solved. The f [n pi n] and f[n pi Delta] couplings are calculated and
they turn out to be reasonably good. The sensibility of f[n pi n] and f[n pi
Delta] to confinement, chiral symmetry breaking and Lorentz invariance is
briefly discussed.Comment: 30 pages in LaTex RevTex, 6 postscript figure
Chiral Symmetry Breaking and Pion Wave Function
We consider here chiral symmetry breaking through nontrivial vacuum structure
with quark antiquark condensates. We then relate the condensate function to the
wave function of pion as a Goldstone mode. This simultaneously yields the pion
also as a quark antiquark bound state as a localised zero mode in vacuum. We
illustrate the above with Nambu Jona-Lasinio model to calculate different
pionic properties in terms of the vacuum structure for breaking of exact or
approximate chiral symmetry, as well as the condensate fluctuations giving rise
to mesons.Comment: latex, revtex, 16 page
An audit on follow up duplex scans to assess graft patency following infra-inguinal arterial bypass surgery
The variance on the shock response of a carbon fibre composite due to the orientation of the weave
Three different orientations of a tape-wrapped carbon fibre composite with phenolic resin matrix (abbreviated to TWCP) have been investigated under one-dimensional shock loading. This has been achieved via a single-stage gas gun, with manganin gauges as the diagnostic tool. The orientations of TWCP studied in this paper were 25°, 45° and 90°, with respect to the impact face. The shock response of these orientations, for this material, has been obtained (the Hugoniot equation of state). These results have been contrasted with previously reported literature data for the same material at different orientations (0° and 20°). It was found that orientation had minimal effect on the behaviour of this composite under shock. The exception to this was the 90° orientation which exhibited an elastic precursor at particle velocities of less than 0.65 mm µs−1; where the shock velocity was equivalent to the elastic sound speed of the material
Estimating the environmental impact of dairy cattle breeding programs through emission intensity.
A recently developed methodological approach for determining the greenhouse gas emissions impact of national breeding programs was applied to measure the effects of current and future breeding goals on the emission intensity (EI) of the Canadian dairy industry. Emission intensity is the ratio of greenhouse gas outputted in comparison to the product generated. Traits under investigation affected EI by either decreasing the direct emissions yield (i.e. increasing feed performance), changing herd structure (i.e. prolonging herd life) or through the dilution effect of increased production (i.e. increasing fat yield). The intensity value (IV) of each trait, defined as the change in emissions' intensity per unit change in each trait, was calculated for each of the investigated traits. The IV trend of these traits was compared for the current and prospective selection index, as well as for a system with and without quota (the supply management policy designed to prevent overproduction). The overall EI of the average genetic merit Canadian dairy herd per breeding female was 5.07 kg CO2eq/kg protein equivalent output. The annual reduction in EI due to the improvement of production traits was -0.027, -0.018 and -0.006 for fat, protein and milk other solids, respectively. The functional traits, herd life and mastitis resistance, had more modest effects (-0.008 and -0.001, respectively). These results are consistent with international studies that identified traits related to production, survival, health and fertility as having the largest impact on the environmental footprint of dairy cattle. Overall, the dairy industry is becoming more efficient by reducing its EI through selection of environmentally favorable traits, with a 1% annual reduction of EI in Canada
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