Adaptive group testing as channel coding with feedback

Group testing is the combinatorial problem of identifying the defective items in a population by grouping items into test pools. Recently, nonadaptive group testing - where all the test pools must be decided on at the start - has been studied from an information theory point of view. Using techniques from channel coding, upper and lower bounds have been given on the number of tests required to accurately recover the defective set, even when the test outcomes can be noisy. In this paper, we give the first information theoretic result on adaptive group testing - where the outcome of previous tests can influence the makeup of future tests. We show that adaptive testing does not help much, as the number of tests required obeys the same lower bound as nonadaptive testing. Our proof uses similar techniques to the proof that feedback does not improve channel capacity.Comment: 4 pages, 1 figur

Interference Mitigation in Large Random Wireless Networks

A central problem in the operation of large wireless networks is how to deal with interference -- the unwanted signals being sent by transmitters that a receiver is not interested in. This thesis looks at ways of combating such interference. In Chapters 1 and 2, we outline the necessary information and communication theory background, including the concept of capacity. We also include an overview of a new set of schemes for dealing with interference known as interference alignment, paying special attention to a channel-state-based strategy called ergodic interference alignment. In Chapter 3, we consider the operation of large regular and random networks by treating interference as background noise. We consider the local performance of a single node, and the global performance of a very large network. In Chapter 4, we use ergodic interference alignment to derive the asymptotic sum-capacity of large random dense networks. These networks are derived from a physical model of node placement where signal strength decays over the distance between transmitters and receivers. (See also arXiv:1002.0235 and arXiv:0907.5165.) In Chapter 5, we look at methods of reducing the long time delays incurred by ergodic interference alignment. We analyse the tradeoff between reducing delay and lowering the communication rate. (See also arXiv:1004.0208.) In Chapter 6, we outline a problem that is equivalent to the problem of pooled group testing for defective items. We then present some new work that uses information theoretic techniques to attack group testing. We introduce for the first time the concept of the group testing channel, which allows for modelling of a wide range of statistical error models for testing. We derive new results on the number of tests required to accurately detect defective items, including when using sequential `adaptive' tests.Comment: PhD thesis, University of Bristol, 201

Delay-rate tradeoff in ergodic interference alignment

Ergodic interference alignment, as introduced by Nazer et al (NGJV), is a technique that allows high-rate communication in n-user interference networks with fast fading. It works by splitting communication across a pair of fading matrices. However, it comes with the overhead of a long time delay until matchable matrices occur: the delay is q^n^2 for field size q. In this paper, we outline two new families of schemes, called JAP and JAP-B, that reduce the expected delay, sometimes at the cost of a reduction in rate from the NGJV scheme. In particular, we give examples of good schemes for networks with few users, and show that in large n-user networks, the delay scales like q^T, where T is quadratic in n for a constant per-user rate and T is constant for a constant sum-rate. We also show that half the single-user rate can be achieved while reducing NGJV's delay from q^n^2 to q^(n-1)(n-2). This extended version includes complete proofs and more details of good schemes for small n.Comment: Extended version of a paper presented at the 2012 International Symposium on Information Theory. 7 pages, 1 figur

The Capacity of Adaptive Group Testing

We define capacity for group testing problems and deduce bounds for the capacity of a variety of noisy models, based on the capacity of equivalent noisy communication channels. For noiseless adaptive group testing we prove an information-theoretic lower bound which tightens a bound of Chan et al. This can be combined with a performance analysis of a version of Hwang's adaptive group testing algorithm, in order to deduce the capacity of noiseless and erasure group testing models.Comment: 5 page

Asymptotic Sum-Capacity of Random Gaussian Interference Networks Using Interference Alignment

We consider a dense n-user Gaussian interference network formed by paired transmitters and receivers placed independently at random in Euclidean space. Under natural conditions on the node position distributions and signal attenuation, we prove convergence in probability of the average per-user capacity C_Sigma/n to 1/2 E log(1 + 2SNR). The achievability result follows directly from results based on an interference alignment scheme presented in recent work of Nazer et al. Our main contribution comes through the converse result, motivated by ideas of `bottleneck links' developed in recent work of Jafar. An information theoretic argument gives a capacity bound on such bottleneck links, and probabilistic counting arguments show there are sufficiently many such links to tightly bound the sum-capacity of the whole network.Comment: 5 pages; to appear at ISIT 201

On the optimality of some group testing algorithms

We consider Bernoulli nonadaptive group testing with k=Θ(n^θ) defectives, for θ∈(0,1). The practical definite defectives (DD) detection algorithm is known to be optimal for θ≥1/2. We give a new upper bound on the rate of DD, showing that DD is strictly suboptimal for θ<0.41. We also show that the SCOMP algorithm and algorithms based on linear programming achieve a rate at least as high as DD, so in particular are also optimal for θ≥1/2

A Finite State Machine Approach to Cluster Identification Using the Hoshen-Kopelman Algorithm

The purpose of this study was to develop an efficient finite state machine implementation of the eponymous Hoshen-Kopelman cluster identification algorithm using the nearest-eight neighborhood rule suitable to applications such as computer modeling for landscape ecology. The implementation presented in this study was tested using both actual land cover maps, as well as randomly generated data similar to those in the original presentation of the Hoshen-Kopelman algorithm for percolation analysis. The finite state machine implementation clearly outperformed a straightforward adaptation of the original Hoshen-Kopelman algorithm on either data type. Research was also conducted to explore the finite state machine\u27s performance on a Palm mobile computing device, and while it was competitive, it did not exceed the performance of the straightforward Hoshen-Kopelman implementation. However, a discussion of why this was the case is provided along with a possible remedy for future hardware designs