Type II secretion: from structure to function

Gram-negative bacteria use the type II secretion system to transport a large number of secreted proteins from the periplasmic space into the extracellular environment. Many of the secreted proteins are major virulence factors in plants and animals. The components of the type II secretion system are located in both the inner and outer membranes where they assemble into a multi-protein, cell-envelope spanning, complex. This review discusses recent progress, particularly newly published structures obtained by X-ray crystallography and electron microscopy that have increased our understanding of how the type II secretion apparatus functions and the role that individual proteins play in this complex system.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/74575/1/j.1574-6968.2006.00102.x.pd

Quantifying the Effect of Pyraclostrobin on Grainfill Period and Kernel Dry Matter Accumulation in Maize

Strobilurin fungicides are effective against a wide range of foliar fungal diseases on several crops and may offer additional physiological benefits, including plants staying green longer than normal (the stay-green effect ). It has been hypothesized that the stay-green effect may extend the grain fill period leading to increased grain yield due to a longer period of dry matter accumulation. We investigated the effect of pyraclostrobin fungicide applied at tasseling on foliar disease suppression, stalk rot severity, the stay-green effect of leaves in the upper canopy, dry matter accumulation, time at physiological maturity, grain yield, and moisture at harvest in maize from 2008 through 2010 in Iowa at six location years. Foliar disease severity was0.1) between pyraclostrobin-treated and non-treated maize in all location years, treated plots tended to have higher yield and grain moisture. Time at physiological maturity did not differ between pyraclostrobin-treated and nontreated plots (P \u3e 0.1). Although we demonstrated an application of pyraclostrobin to maize delayed senescence of the leaves thus contributing to the stay-green effect, our data did not show grain-fill period extension

Drainage Water Storage for Improved Resiliency and Environmental Performance of Agricultural Landscapes

Drained lands, which include some of the most productive lands in the world, can experience both water excess and water deficit within a year. Storing drained water within the landscape could increase the sustainability of water for agriculture, particularly as intense rainfall and prolonged summer drought continue to increase under future climate change. A team of researchers and extension specialists from nine states are currently working towards a vision of transforming the process of designing and implementing agricultural drainage to include storage through the use of controlled drainage, saturated buffers, and drainage water recycling (i.e. capture, storage, and reuse). Field research data from experimental drainage sites from across the U.S. Corn Belt have been brought together in a database to support synthesis and modeling to determine economic and environmental impacts of drainage water storage. Results from this effort will extend the strategies and tools to agricultural producers, the drainage industry, watershed managers, agencies, and policy makers, and educate the next generation of engineers and scientists to design drainage systems that include water storage in the landscape

Maize Leaf Appearance Rates: A Synthesis From the United States Corn Belt

The relationship between collared leaf number and growing degree days (GDD) is crucial for predicting maize phenology. Biophysical crop models convert GDD accumulation to leaf numbers by using a constant parameter termed phyllochron (°C-day leaf−1) or leaf appearance rate (LAR; leaf oC-day−1). However, such important parameter values are rarely estimated for modern maize hybrids. To fill this gap, we sourced and analyzed experimental datasets from the United States Corn Belt with the objective to (i) determine phyllochron values for two types of models: linear (1-parameter) and bilinear (3-parameters; phase I and II phyllochron, and transition point) and (ii) explore whether environmental factors such as photoperiod and radiation, and physiological variables such as plant growth rate can explain variability in phyllochron and improve predictability of maize phenology. The datasets included different locations (latitudes between 48° N and 41° N), years (2009–2019), hybrids, and management settings. Results indicated that the bilinear model represented the leaf number vs. GDD relationship more accurately than the linear model (R2 = 0.99 vs. 0.95, n = 4,694). Across datasets, first phase phyllochron, transition leaf number, and second phase phyllochron averaged 57.9 ± 7.5°C-day, 9.8 ± 1.2 leaves, and 30.9 ± 5.7°C-day, respectively. Correlation analysis revealed that radiation from the V3 to the V9 developmental stages had a positive relationship with phyllochron (r = 0.69), while photoperiod was positively related to days to flowering or total leaf number (r = 0.89). Additionally, a positive nonlinear relationship between maize LAR and plant growth rate was found. Present findings provide important parameter values for calibration and optimization of maize crop models in the United States Corn Belt, as well as new insights to enhance mechanisms in crop models

A very thin havar film vacuum window for heavy ions to perform radiobiology studies at the BNL Tandem

Heavy ion beams from the BNL Tandem Van de Graaff accelerators will be made available for radiobiology studies on cell cultures. Beam energy losses need to be minimized both in the vacuum window and in the air in order to achieve the ranges required for the cells to be studied. This is particularly challenging for ions heavier than iron. The design is presented of a 0.4-inch diameter Havar film window that will satisfy these requirements. Films as thin as 80 microinches were successfully pressure tested. The final thickness to be used may be slightly larger to help in achieving pin hole free windows. We discuss design considerations and present pressure and vacuum test results as well as tests with heavy ion beams

Metabolic and hormonal studies of Type 1 (insulin-dependent) diabetic patients after successful pancreas and kidney transplantation

Long-term normalization of glucose metabolism is necessary to prevent or ameliorate diabetic complications. Although pancreatic grafting is able to restore normal blood glucose and glycated haemoglobin, the degree of normalization of the deranged diabetic metabolism after pancreas transplantation is still questionable. Consequently glucose, insulin, C-peptide, glucagon, and pancreatic polypeptide responses to oral glucose and i.v. arginine were measured in 36 Type 1 (insulin-dependent) diabetic recipients of pancreas and kidney allografts and compared to ten healthy control subjects. Despite normal HbA1 (7.2±0.2%; normal <8%) glucose disposal was normal only in 44% and impaired in 56% of the graft recipients. Normalization of glucose tolerance was achieved at the expense of hyperinsulinaemia in 52% of the subjects. C-peptide and glucagon were normal, while pancreatic polypeptide was significantly higher in the graft recipients. Intravenous glucose tolerance (n=21) was normal in 67% and borderline in 23%. Biphasic insulin release was seen in patients with normal glucose tolerance. Glucose tolerance did not deteriorate up to 7 years post-transplant. In addition, stress hormone release (cortisol, growth hormone, prolactin, glucagon, catecholamines) to insulin-induced hypoglycaemia was examined in 20 graft recipients and compared to eight healthy subjects. Reduced blood glucose decline indicates insulin resistance, but glucose recovery was normal, despite markedly reduced catecholamine and glucagon release. These data demonstrate the effectiveness of pancreatic grafting in normalizing glucose metabolism, although hyperinsulinaemia and deranged counterregulatory hormone response are observed frequently

Corn nitrogen rate recommendation tools’ performance across eight US midwest corn belt states

Determining which corn (Zea mays L.) N fertilizer rate recommendation tools best predict crop N need would be valuable for maximizing profits and minimizing environmental consequences. Simultaneous comparisons of multiple tools across various environmental conditions have been limited. The objectives of this research were to evaluate the performance of publicly‐available N fertilizer recommendation tools across diverse soil and weather conditions for: (i) prescribing N rates for planting and split‐fertilizer applications, and (ii) economic and environmental effects. Corn N‐response trials using standardized methods were conducted at 49 sites, spanning eight US Midwest states and three growing seasons. Nitrogen applications included eight rates in 45 kg N ha−1 increments all at‐planting and matching rates with 45 kg N ha−1 at‐planting plus at the V9 development stage. Tool performances were compared to the economically optimal N rate (EONR). Over this large geographic region, only 10 of 31 recommendation tools (mainly soil nitrate tests) produced N rate recommendations that weakly correlated to EONR (P ≤ .10; r2 ≤ .20). With other metrics of performance, the Maximum Return to N (MRTN) soil nitrate tests, and canopy reflectance sensing came close to matching EONR. Economically, all tools but the Maize‐N crop growth model had similar returns compared to EONR. Environmentally, yield goal based tools resulted in the highest environmental costs. Results show that no tool was universally reliable over this study\u27s diverse growing environments, suggesting that additional tool development is needed to better represent N inputs and crop utilization at a larger regional level

BrabA.11339.a: anomalous diffraction and ligand binding guide towards the elucidation of the function of a ‘putative β-lactamase-like protein’ from Brucella melitensis

The structure of a β-lactamase-like protein from B. melitensis was solved independently using two data sets with anomalous signal. Anomalous Fourier maps could confirm the identity of two metal ions in the active site. AMP-bound and GMP-bound structures provide hints to the possible function of the protein

Standardized research protocols enable transdisciplinary research of climate variation impacts in corn production systems

The important questions about agriculture, climate, and sustainability have become increasingly complex and require a coordinated, multifaceted approach for developing new knowledge and understanding. A multistate, transdisciplinary project was begun in 2011 to study the potential for both mitigation and adaptation of corn-based cropping systems to climate variations. The team is measuring the baseline as well as change of the system\u27s carbon (C), nitrogen (N), and water footprints, crop productivity, and pest pressure in response to existing and novel production practices. Nine states and 11 institutions are participating in the project, necessitating a well thought out approach to coordinating field data collection procedures at 35 research sites. In addition, the collected data must be brought together in a way that can be stored and used by persons not originally involved in the data collection, necessitating robust procedures for linking metadata with the data and clearly delineated rules for use and publication of data from the overall project. In order to improve the ability to compare data across sites and begin to make inferences about soil and cropping system responses to climate across the region, detailed research protocols were developed to standardize the types of measurements taken and the specific details such as depth, time, method, numbers of samples, and minimum data set required from each site. This process required significant time, debate, and commitment of all the investigators involved with field data collection and was also informed by the data needed to run the simulation models and life cycle analyses. Although individual research teams are collecting additional measurements beyond those stated in the standardized protocols, the written protocols are used by the team for the base measurements to be compared across the region. A centralized database was constructed to meet the needs of current researchers on this project as well as for future use for data synthesis and modeling for agricultural, ecosystem, and climate sciences

An ensemble of structures of Burkholderia pseudomallei 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase

An ensemble of crystal structures are reported for 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase from B. pseudomallei. The structures include two vanadate complexes, revealing the structure of a close analogue of the transition state for phosphate transfer