2 research outputs found

    Cdna Cloning And 1.75 Ã… Crystal Structure Determination Of Ppl2, An Endochitinase And N-acetylglucosamine-binding Hemagglutinin From Parkia Platycephala Seeds

    No full text
    Parkia platycephala lectin 2 was purified from Parkia platycephala (Leguminosae, Mimosoideae) seeds by affinity chromatography and RP-HPLC. Equilibrium sedimentation and MS showed that Parkia platycephala lectin 2 is a nonglycosylated monomeric protein of molecular mass 29 407 ± 15 Da, which contains six cysteine residues engaged in the formation of three intramolecular disulfide bonds. Parkia platycephala lectin 2 agglutinated rabbit erythrocytes, and this activity was specifically inhibited by N-acetylglucosamine. In addition, Parkia platycephala lectin 2 hydrolyzed β(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-β-d-glucopyranose units in chitin. The full-length amino acid sequence of Parkia platycephala lectin 2, determined by N-terminal sequencing and cDNA cloning, and its three-dimensional structure, established by X-ray crystallography at 1.75 Å resolution, showed that Parkia platycephala lectin 2 is homologous to endochitinases of the glycosyl hydrolase family 18, which share the (βα)8 barrel topology harboring the catalytic residues Asp125, Glu127, and Tyr182. © 2006 The Authors.2731739623974Van Damme, E.J.M., Peumans, W.J., Barre, A., Rougé, P., Plant lectins: A composite of several distinct families of structurally and evolutionary related proteins with diverse biological roles (1998) Crit Rev Plant Sci, 17, pp. 575-692Gabius, H.-J., Gabius, S., (1997) Glycoscience. Status and Perspectives, , Chapman & Hall, WeinheimDodd, R.B., Drickamer, K., Lectin-like proteins in model organisms: Implications for evolution of carbohydrate-binding activity (2001) Glycobiology, 11, pp. 71-79Rini, J.M., Lectin structure (1995) Annu Rev Biomol Struct, 24, pp. 551-577Weis, W.I., Drickamer, K., Structural basis of lectin-carbohydrate recognition (1996) Annu Rev Biochem, 65, pp. 441-473Elgavish, S., Shaanan, B., Lectin-carbohydrate interactions: Different folds, common recognition principles (1997) Trends Biochem Sci, 22, pp. 462-467Loris, R., Hamelryck, T., Bouckaert, J., Wyns, L., Legume lectin structure (1998) Biochim Biophys Acta, 1383, pp. 9-36Bouckaert, J., Hamelryck, T., Wyns, L., Loris, R., Novel structures of plant lectins and their complexes with carbohydrates (1999) Curr Opin Struct Biol, 9, pp. 572-577Vijayan, M., Chandra, N., Lectins (1999) Curr Opin Struct Biol, 9, pp. 707-714Chervenak, M.C., Toone, E.J., Calorimetric analysis of the binding of lectins with overlapping carbohydrate binding (1995) Biochemistry, 34, pp. 5685-5695Dam, T.K., Cavada, B.S., Grangeiro, T.B., Santos, C.F., De Sousa, F.A.M., Oscarson, S., Brewer, C.F., Diocleinae lectins are a group of proteins with conserved binding sites for the core trimannoside of asparagine-linked oligosaccharides and differential specificities for complex carbohydrates (1998) J Biol Chem, 273, pp. 12082-12088Dam, T.K., Cavada, B.S., Grangeiro, T.B., Santos, C.F., Ceccatto, V.M., De Sousa, F.A.M., Oscarson, S., Brewer, C.F., Thermodynamic binding studies of lectins from the diocleinae subtribe to deoxy analogs of the core trimannoside of asparagine-linked oligosaccharides (2000) J Biol Chem, 275, pp. 16119-16126Dam, T.K., Roy, R., Das, S.K., Oscarson, S., Brewer, C.F., Binding of multivalent carbohydrates to concanavalin a and Dioclea grandiflora lectin. Thermodynamic analysis of the 'multivalency effect' (2000) J Biol Chem, 275, pp. 14223-14230Suvachittanont, W., Peutpaiboon, A., Lectin from Parkia speciosa seeds (1992) Phytochemistry, 31, pp. 4065-4070Utarabhand, P., Akkayanont, P., Purification of a lectin from Parkia javanica beans (1995) Phytochemistry, 38, pp. 281-285Cavada, B.S., Madeira, S.V.F., Calvete, J.J., Sousa, L.A.G., Bomfim, L.R., Dantas, A.R., Lopes, M.C., Pinto, V.P.T., Purification, chemical, and immunochemical properties of a new lectin from Mimosoideae (Parkia discolor) (2000) Prep Biochem Biotech, 30, pp. 271-280Cavada, B.S., Santos, C.F., Grangeiro, T.B., Moreira Da Silva, L.I.M., Campos, M.J.O., De Sousa, F.A.M., Calvete, J.J., Isolation and partial characterization of a lectin from Parkia platycephala Benth seeds (1997) Physiol Mol Biol Plant, 3, pp. 109-115Ramos, M.V., Cavada, B.S., Bomfim, L.R., Debray, H., Mazard, A.-M., Calvete, J.J., Grangeiro, T.B., Rougé, P., Interaction of the seed lectin from Parkia platycephala (Mimosoideae) with carbohydrates and complex glycans (1999) Prot Pept Lett, 6, pp. 215-222Mann, K., Farias, C.M., Gallego Del Sol, F.G., Santos, C.F., Grangeiro, T.B., Nagano, C.S., Cavada, B.S., Calvete, J.J., The amino-acid sequence of the glucose/mannose-specific lectin isolated from Parkia platycephala seeds reveals three tandemly arranged jacalin-related domains (2001) Eur J Biochem, 268, pp. 4414-4422Gallego Del Sol, F., Gómez, J., Hoos, C., Nagano, C.S., Cavada, B.S., England, P., Calvete, J.J., Energetics of 5-bromo-4-chloro-3-indolyl-α-D-mannose binding to the Parkia platycephala seed lectin and its use for MAD phasing (2005) Acta Cryst F, 61, pp. 326-331Gallego Del Sol, F., Nagano, C.S., Cavada, B.S., Calvete, J.J., The first crystal structure of a Mimosoideae lectin reveals a novel quaternary arrangement of a widespread domain (2005) J Mol Biol, 353, pp. 574-583Heywood, V.H., (1971) Chemotaxonomy of the Leguminosae, pp. 1-29. , Harborne JB & Boulter D, eds, Academic Press, LondonChrispeels, M.J., Raikhel, N.V., Lectins, lectin genes, and their role in plant defense (1991) Plant Cell, 3, pp. 1-9Wang, X., Ma, Q., Characterization of a jasmonate-regulated wheat protein related to a β-glucosidase-aggregating factor (2005) Plant Physiol Biochem, 43, pp. 185-192Collinge, D.B., Kragh, K.M., Mikkelsen, J.D., Nielsen, K.K., Rasmussen, U., Vad, K., Plant chitinases (1993) Plant J, 3, pp. 31-40Hamel, F., Boivin, R., Tremblay, C., Bellemare, G., Structural and evolutionary relationships among chitinases of flowering plants (1997) J Mol Evol, 44, pp. 614-624Kasprzewska, A., Plant chitinases - Regulation and function (2003) Cell Mol Biol Lett, 8, pp. 809-824Cavada, B.S., Castellón, R.E.R., Vasconcelos, G.G., Rocha, B.A.M., Bezerra, G.A., Debray, H., Delatorre, P., Pinto, V.P.T., Crystallization and preliminary X-ray diffraction analysis of a new chitin-binding protein from Parkia platycephala seeds (2005) Acta Crystallogr F, 61, pp. 841-843Rawitch, A.B., Pollock, H.G., Yang, S.-X., Thyroglobulin glycosylation: Location and nature of the N-linked oligosaccharide units in bovine thyroglobulin (1993) Arch Biochem Biophys, 300, pp. 271-279Hill Jr., H.D., Reynolds, J.A., Hill, R.L., Purification, composition, molecular weight, and subunit structure of ovine submaxillary mucin (1977) J Biol Chem, 252, pp. 3791-3798Spiro, R.G., Bhoyroo, D., Structure of the O-glycosidically linked carbohydrate units of fetuin (1974) J Biol Chem, 249, pp. 5704-5717Green, E.D., Adelt, G., Baenziger, J.U., Wilson, S., Van Halbeek, H., The asparagine-linked oligosaccharides on bovine fetuin. Structural analysis of N-glycanase-released oligosaccharide by 500-megahertz1H NMR spectroscopy (1988) J Biol Chem, 263, pp. 18253-18268Rohrer, J.S., Cooper, G.A., Townsend, R.R., Identification, quantitation, and characterization of glycopeptides in reversed-phase HPLC separations of glycoprotein proteolytic digests (1993) Anal Biochem, 212, pp. 7-16Henrissat, B., A classification of glycosyl hydrolases based on amino acid sequence similarities (1991) Biochem J, 280, pp. 309-316Jekel, P.A., Hartmann, B.H., Beintema, J.J., The primary structure of hevamine, an enzyme with lysozyme/chitinase activity from Hevea brasiliensis latex (1991) Eur J Biochem, 200, pp. 123-130Van Scheltinga, A.C.T., Kalk, K.H., Beintema, J.J., Dijkstra, B.W., Crystal structures of hevamine, a plant defense protein with chitinase and lysozyme activity, and its complex with an inhibitor (1994) Structure, 2, pp. 1181-1189Chye, M.L., Zhao, K.J., He, Z.M., Ramalingam, S., Fung, K.L., An agglutinating chitinase with two chitin-binding domains confers fungal protection in transgenic potato (2005) Planta, 220, pp. 717-730Tang, C.M., Chye, M.L., Ramalingam, S., Ouyang, S.W., Zhao, K.J., Ubhayasekera, W., Mowbray, S.L., Functional analyses of the chitin-binding domains and the catalytic domain of Brassica juncea chitinase BjCHI1 (2004) Plant Mol Biol, 56, pp. 285-298Robertus, J.D., Monzingo, A.F., The structure and action of chitinases (1999) EXS, 87, pp. 125-135Kaomek, M., Mizuno, K., Fujimura, T., Sriyotha, P., Cairns, J.R., Cloning, expression, and characterization of an antifungal chitinase from Leucaena leucocephala de Wit (2003) Biosci Biotechnol Biochem, 67, pp. 667-676Hennig, M., Jansonius, J.N., Van Scheltinga, A.C.T., Dijkstra, B.W., Schlesier, B.J., Crystal structure of concanavalin B at 1.65 a resolution. An 'inactivated' chitinase from seeds of Canavalia ensiformis (1995) J Mol Biol, 254, pp. 237-246Van Scheltinga, A.C.T., Hennig, M., Dijkstra, B.W., The 1.8 a ° resolution structure of hevamine, a plant chitinase/lysozyme, and analysis of the conserved sequence and structure motifs of glycosyl hydrolase family 18 (1996) J Mol Biol, 262, pp. 243-257Lawton, K.A., Beck, J., Potter, S., Ward, E., Ryals, J., Regulation of cucumber class III chitinase gene expression (1994) Mol Plant-Microbe Interact, 7, pp. 48-57Copley, R.R., Barton, G.J., A structural analysis of phosphate and sulphate binding sites in proteins. Estimation of propensities for binding and conservation of phosphate binding sites (1994) J Mol Biol, 242, pp. 321-329Bokma, E., Rozeboom, H.J., Sibbald, M., Dijkstra, B.W., Beintema, J.J., Expression and characterization of active site mutants of hevamine, a chitinase from the rubber tree Hevea brasiliensis (2002) Eur J Biochem, 269, pp. 893-901Pastuszak, I., Drake, R., Elbein, A.D., Kidney N-acetylgalactosamine (GalNAc)-1-phosphate kinase, a new pathway of GalNAc activation (1996) J Biol Chem, 271, pp. 20776-20782Ainouz, I.L., Sampaio, A.H., Benevides, N.M.B., Freitas, A.L.P., Costa, F.H.F., Carvalho, M.R., Pinheirojoventino, F., Agglutination of enzyme treated erythrocytes by Brazilian marine algal extracts (1992) Bot Mar, 35, pp. 475-479Schägger, H., Von Jagow, G., Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa (1987) Anal Biochem, 166, pp. 368-379Henrikson, R.L., Meredith, S.C., Amino acid analysis by reversed-phase high-performance liquid chromatography: Precolumn derivatization with phenylisothiocyanate (1984) Anal Biochem, 136, pp. 65-71Steenkamp, J., Wiid, I., Lourens, A., Van Helden, P., Improved method for DNA extraction from Vitis vinifera (1994) Am J Enol Vitic, 45, pp. 102-106Frohman, M.A., Martin, G.R., Rapid amplification of cDNA ends using nested primers (1989) Techniques, 1, pp. 165-170(1994) Acta Cryst, D50, pp. 760-763. , Collaborative Computational Project Number
    corecore