38 research outputs found

    Expected accuracy of proximal and distal temperature estimated by wireless sensors, in relation to their number and position on the skin

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    A popular method to estimate proximal/distal temperature (TPROX and TDIST) consists in calculating a weighted average of nine wireless sensors placed on pre-defined skin locations. Specifically, TPROX is derived from five sensors placed on the infra-clavicular and mid-thigh area (left and right) and abdomen, and TDIST from four sensors located on the hands and feet. In clinical practice, the loss/removal of one or more sensors is a common occurrence, but limited information is available on how this affects the accuracy of temperature estimates. The aim of this study was to determine the accuracy of temperature estimates in relation to number/position of sensors removed. Thirteen healthy subjects wore all nine sensors for 24 hours and reference TPROX and TDIST time-courses were calculated using all sensors. Then, all possible combinations of reduced subsets of sensors were simulated and suitable weights for each sensor calculated. The accuracy of TPROX and TDIST estimates resulting from the reduced subsets of sensors, compared to reference values, was assessed by the mean squared error, the mean absolute error (MAE), the cross-validation error and the 25th and 75th percentiles of the reconstruction error. Tables of the accuracy and sensor weights for all possible combinations of sensors are provided. For instance, in relation to TPROX, a subset of three sensors placed in any combination of three non-homologous areas (abdominal, right or left infra-clavicular, right or left mid-thigh) produced an error of 0.13°C MAE, while the loss/removal of the abdominal sensor resulted in an error of 0.25°C MAE, with the greater impact on the quality of the reconstruction. This information may help researchers/clinicians: i) evaluate the expected goodness of their TPROX and TDIST estimates based on the number of available sensors; ii) select the most appropriate subset of sensors, depending on goals and operational constraints

    Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms

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    Background: Predicting protein function has become increasingly demanding in the era of next generation sequencing technology. The task to assign a curator-reviewed function to every single sequence is impracticable. Bioinformatics tools, easy to use and able to provide automatic and reliable annotations at a genomic scale, are necessary and urgent. In this scenario, the Gene Ontology has provided the means to standardize the annotation classification with a structured vocabulary which can be easily exploited by computational methods.Results: Argot2 is a web-based function prediction tool able to annotate nucleic or protein sequences from small datasets up to entire genomes. It accepts as input a list of sequences in FASTA format, which are processed using BLAST and HMMER searches vs UniProKB and Pfam databases respectively; these sequences are then annotated with GO terms retrieved from the UniProtKB-GOA database and the terms are weighted using the e-values from BLAST and HMMER. The weighted GO terms are processed according to both their semantic similarity relations described by the Gene Ontology and their associated score. The algorithm is based on the original idea developed in a previous tool called Argot. The entire engine has been completely rewritten to improve both accuracy and computational efficiency, thus allowing for the annotation of complete genomes.Conclusions: The revised algorithm has been already employed and successfully tested during in-house genome projects of grape and apple, and has proven to have a high precision and recall in all our benchmark conditions. It has also been successfully compared with Blast2GO, one of the methods most commonly employed for sequence annotation. The server is freely accessible at http://www.medcomp.medicina.unipd.it/Argot2Journal Articleinfo:eu-repo/semantics/publishe

    FSH secretory pattern and degree of concordance with LH in amenorrheic, fertile, and postmenopausal women Downloaded from

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    FSH secretory pattern and degree of concordance with LH in amenorrheic, fertile, and postmenopausal women. Am. J. Physiol. 264 (Endocrinol. Metab. 27): E776-E781, 1993.-Pulsatile secretion of gonadotropin was investigated in amenorrheic patients and in fertile and postmenopausal women to assess both follicle-stimulating hormone (FSH) episodic secretion and its temporal coupling with luteinizing hormone (LH). Three groups of amenorrheic patients were studied: hyperandrogenic (n = 20), hypogonadotropic (n = 51), and normogonadotropic (n = 31). Nineteen fertile women (during the follicular and luteal phases of the cycle) and sixteen postmenopausal women were investigated as reference groups. All subjects demonstrated the presence of a distinct pulsatile pattern with LH and FSH pulses/4 h as follows: hyperandrogenie 3.95 t 0.26 and 3.85 t 0.2, hypogonadotropic 3.76 t 0.26 and 3.9 t 0.16, normogonadotropic 3.5 2 0.2 and 3.9 t 0.17 LH and FSH pulses/4 h, respectively (means t SE). Normal controls showed 4.1 t 0.2 and 3.1 & 0.2 pulses/4 h for LH (P < 0.05) and 3.2 * 0.1 and 3.6 t 0.3 pulses/4 h for FSH, during follicular and luteal phases, respectively. Postmenopausal women showed 3.6 & 0.2 and 3.0 t 0.3 pulses/4 h for LH and FSH, respectively. Specific concordance (SC) index demonstrated that LH and FSH were significantly and simultaneously secreted in all groups. Conversely, LH and FSH were not temporally related during the luteal phase. In conclusion, we report a distinct FSH episodic secretion and its temporal linkage with LH pulses irrespective of plasma concentrations of gonadal steroids in secondary amenorrhea. amenorrhea; luteinizing hormone and follicle-stimulating hormone concomitant secretion; pulsatile secretion; menstrual cycle; menopause MANY NEUROTRANSMITTERS, secretagogues, and hormones are secreted in an episodic manner Luteinizing hormone (LH) and follicle-stimulating hormone (FSH) episodic secretions have been studied and reported to be temporally coupled both in men (30) and in women MATERIALS AND METHODS Subjects. Among the patients clinically evaluated in our department in the last 3 yr, 137 women were selected for this study after informed consent was obtained. The women underwent the regular procedure of hormonal analysis to assess the causes of their disturbances. All subjects showed normal thyroid and adrenal function and had not received any hormonal treatment for at least 3 mo. Amenorrheic patients were selected on the basis of the disappearance of menses at least 6 mo before the study and the absence of depression or psychiatric diseases assessed according to the Diagnostical Statistical Manual-III (revised) criteria. On the basis of the clinical evaluation and the hormonal results Reference groups consisted of 19 normally cycling (group 4) and 16 postmenopausal (group 5) women. Normal subjects were selected on the basis of the presence of normal menstrual cycles for the previous 12 mo, whereas postmenopausal women were enrolled only when natural menopause had occurred within the last 5 yr and the women had low estradiol plasma levels. All subjects underwent a pulsatility study of 4 h (sampling every 10 min) from 8 A.M. to 12 P.M., as previously described (12). Normally cycling women underwent the test twice, during the follicular (between day 6 and day 10) and the luteal phases (between day 19 and day 24) of the cycle. All samples were immediately centrifuged, and serum was stored frozen at -20°C until assayed. The study protocol was approved by the Human Studies Committee of the University of Modena, Italy. Assays. To determine LH and FSH concentrations an immunofluorimetric assay (Pharmacia, Uppsala, Sweden) was used because a highly sensitive assaying system was required. The assay was a time-resolved measurement, which is a sandwich fluorescence technique with two monoclonal antibodies raised against different epitopes of cy-and ,&subunits of LH and FSH E776 0193-1849/93 $2.0

    Puerperal breast feeding does not stimulate circulating opioids in humans.

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    ACTH, beta lipotropin (beta LPH), beta endorphin (beta EP), Prolactin (PRL) and Cortisol were measured in the first five days of puerperium at 9:00, before and 30 minutes after suckling, in 7 healthy lactating women. With the exception of PRL plasma levels which decline, although remaining at high concentrations during the observation period, all the other parameters showed a sudden fall from the high levels found at delivery, reaching stable normal levels (beta LPH, beta EP, Cortisol) or concentrations which were 50% lower than normal (ACTH), from the second day of puerperium. Suckling confirms its capacity to release plasma PRL, while all the other indices remain unmodified. Despite the experimental evidence that serotoninergic neurons are involved both in the PRL response to suckling and the circadian rhythmicity and stress response of proopiocortin-related peptides, the present results suggest that breast feeding is not a stressful situation, as no typical proopiocortin-related peptide response is evident, and that the activation of PRL release is related to stimulation of serotoninergic neurons which differ from those involved in the control of proopiocortin-related peptide secretion

    Model of Sensor Error from Multiple Simultaneous Continuous Glucose Monitors in the Same Subject

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    Objective: A model of the sensor error is crucial to design reliable simulation scenarios for testing algorithms relying on continuous glucose monitoring (CGM), e.g., artificial pancreas control algorithms. The aim of this study is to develop such a model by using multiple CGM recordings simultaneously measured on the same subject. Method: The database consists of 36 data sets collected in 19 adults with type 1 diabetes. Subjects have been recruited at the Oregon Health and Science University (Portland, OR) and admitted for two sessions of 9 h duration each. Glucose concentration was measured simultaneously by four different Dexcom SEVEN PLUS sensors at 5 min sampling. HemoCue Glucose 201 Analyzer plasma samples were collected in parallel every 15 min as reference. Plasma samples were fitted against each of the four CGM traces, exploiting individualized models of plasma-to-interstitium kinetics, calibration, and sensor drift. The four residuals profiles were compared in order to identify the different components of the sensor error. Result: The first identified component is the measurement error. In addition, a model error component was identified, which reflects CGM errors due to both plasma-to-interstitium physiological model and technology issues, e.g., calibration/drift. Both components are satisfactorily described by a low-order autoregressive model. Use in simulation of this sensor error model generates realistic profiles. Conclusion: The availability of multiple sensor data measured simultaneously in the same subject is key to develop a sensor error model. Our results show that, in addition to measurement error, an additional component is needed to account for physiological and technological uncertainties. This sensor error model will be incorporated in the Food and Drug Administration-accepted University of Virginia/Padova type 1 diabetes simulator

    Hyperendorphinemia in obesity and relationships to affective state.

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    Eight obese patients (exceeding ideal body weight by 50% or more) with no endocrinological or metabolic disorders and 8 healthy, age-matched, normal-weight volunteers were submitted to an overnight short dexamethasone (DXM) suppression test and to a psychological assessment through various psychometric scales. Plasma B-Endorphin (B-EP), B-Lipotropin (B-LPH), ACTH and cortisol concentrations were evaluated in basal conditions, as well as 9 and 17 hours after late night administration of 1 mg DXM in both groups. All hormones were measured by radioimmunoassay, either directly in the plasma (ACTH and cortisol) or after silicic acid extraction and Sephadex G-75 column chromatography (B-LPH and B-EP). In obese patients, plasma B-EP levels in basal conditions were three times higher than in normal weight controls and remained unaltered by DXM suppression. ACTH and B-LPH, in contrast, were within the normal range and were significantly reduced by DXM. In 3 of the 8 patients, plasma cortisol concentrations at 17 hours post-DXM were greater than 50 ng/ml indicating an early escape from the suppression. Psychometric evaluations revealed a prevalence of depressive personality in obese patients. These data indicate an hypersecretion of B-EP in obese patients, which is only partially dependent on hypothalamic control
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