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35 research outputs found
Chemostat culture systems support diverse bacteriophage communities from human feces
Author
A Chao
A Edlund
+62 more
A Reyes
A Reyes
AE Perez-Cobas
AS Whiteley
BE Dutilh
C Brace
C Lozupone
CA Suttle
CR Fischer
D Shahinas
D Willner
D Willner
DR Zerbino
DT Pride
DT Pride
EA Dinsdale
EG Zoetendal
EO Petrof
F Meyer
FA Murphy
GS Crowther
GS Crowther
GT Macfarlane
JA McDonald
JG Caporaso
JG Caporaso
JM Norman
JM Rothberg
JR Cole
K Mizoguchi
KH Kim
LC Fortier
M Breitbart
M Doolittle
M Ellekilde
M Haynes
M Heldal
M Ly
M Naidu
M Ventura
MN Price
MR Clokie
N Lu
NJ Gotelli
Q Wang
R Freter
R Robles-Sikisaka
RC Edgar
RT Noble
S Minot
S Minot
SJ Labrie
SL Russell
SR Abeles
T Namiki
TM Santiago-Rodriguez
TZ DeSantis
U Hofer
V Foulongne
W Li
Y Hu
Y Peng
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
Full text link
Crossref
Stool metatranscriptomics: A technical guideline for mRNA stabilisation and isolation
Author
AD Kostic
AE Perez-Cobas
+36 more
B Volkmer
C Mettel
CF Maurice
DE Wood
E Kopylova
EA Franzosa
EG Zoetendal
FM Lakay
G Flekna
G Giannoukos
H Li
H Li
HJ Flint
HJ Haiser
I Sekirov
Irene Wagner-Döbler
JA Bernstein
Jürgen Tomasch
KJ Bandyra
L Monteiro
LH So
LM Shulman
M Reck
MA Mahowald
Michael Jarek
Michael Reck
MJ Gosalbes
MP Deutscher
MW Pfaffl
Peter Husemann
PJ Turnbaugh
PJ Turnbaugh
S He
S Roux
SM Gifford
Zhiluo Deng
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
Get PDF
Crossref
The effects of antibiotics on the microbiome throughout development and alternative approaches for therapeutic modulation
Author
A Hsiao
A Morgun
+172 more
A Ross-Gillespie
A Sulakvelidze
A Svensson
A Vrieze
AA Filippov
AE Perez-Cobas
AK Veenendaal
AM Kauppi
AM Moore
Amy Langdon
AT Stefka
B Boursi
B Brismar
B Brismar
B Martinez de Tejada
BC Johnston
BE Murray
C de la Fuente-Núñez
C Greenwood
C Hill
C Jernberg
C Roduit
CE Nord
CE Nord
Centers for Disease Control and Prevention (CDC)
CF Maurice
CG Buffie
CG Buffie
CI Liu
CM Bassis
CM Theriot
CY Chang
D Bikard
D Wang
DA Rasko
DB DiGiulio
DT Hung
E Bonifacio
E Hernandez
E Holmes
E Jimenez
E Zaura
EA Shakhnovich
EA Yurtsev
EB Hollister
EJ Videlock
EK Gough
EL Lopez
ES Lim
EY Hsiao
F Guarner
F Raymond
G Cammarota
Gautam Dantas
GD Armstrong
GG Nahum
GW Tannock
H Makino
H Suga
HB Felise
HE Jakobsson
HK Allen
Human Microbiome Project Consortium
HW Smith
I Cho
I Sekirov
I Trehan
I Yosef
IK Yap
IY Hwang
J Kaminski
J Penders
J Stripling
JA Ferreyra
JD Lewis
JI Gordon
JP Wyatt
JP Zackular
JR Marchesi
JR Verani
JS Bakken
JS Lichtman
JS Pinkner
JT Higa
JY Chang
K Aagaard
K Geldart
K Marild
K Sunakawa
KA Knoop
KH Mikkelsen
KM Ng
KM Smith
KO Bender
L Bailey
L Cegelski
L Cimperman
L Cuthbertson
L Dethlefsen
L Dethlefsen
L Kager
L Khalifa
LC Antunes
LE Romick-Rosendale
LM Cox
LV McFarland
LW Parfrey
M Gipponi
M Hentzer
M Kong
M Manefield
M Mshvildadze
M Prudhomme
M Schultz
M Smith
M Starkey
MA Smith
MB Azad
MB Miller
MF De La Cochetiere
MG Dominguez-Bello
MI Smith
MK Gibson
MN Alekshun
MS Kinch
N Lambert-Zechovsky
N Segata
Nathan Crook
PJ Turnbaugh
PJ Turnbaugh
PS La Rosa
R Garcia-Contreras
R Jumpertz
R Martin
R Pei
R Zambelloni
RC Allen
RJ Citorik
RJ Citorik
RL Jump
S Abubucker
S Gupta
S Hempel
S Muschiol
S Rautava
S Subramanian
S Tanaka
S Yamagami
SC Corr
SE Greene
SJ Yaung
SM Teo
T Bergan
T Kline
T Maeda
T Olszak
T Taipale
T Yatsunenko
TB Rasmussen
TK Lu
V Berg
V Lievin-Le Moal
VA Karginov
VB Pereira
VS Kuppala
WL Shoop
X Zheng
Y Wakamoto
Y Zhao
YH Dong
YM Shevchuk
Z Chen
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
Get PDF
Crossref
The effect of short-course antibiotics on the resistance profile of colonizing gut bacteria in the ICU: a prospective cohort study
Author
A Ferreiro
A Kumar
+30 more
A Porse
A Rhodes
A Tabah
AE Budding
AE Livanos
AE Perez-Cobas
BB Whiles
BH Good
BJ Callahan
CW Seymour
DE Freedberg
DJ Rocha
F Raymond
H Gumpert
J Baggs
JC Alverdy
L Dethlefsen
M Lescat
M Paul
M Singer
M Willmann
MA Terry
MV Tulstrup
N Karami
O Tenaillon
PM Filius
R Ferrer
RC Urtasun
TH Dellit
VX Liu
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
No full text
Crossref
Effects of defined gut microbial ecosystem components on virulence determinants of Clostridioides difficile
Author
A Goorhuis
A Khoruts
+46 more
A Weingarden
AE Perez-Cobas
AE Perez-Cobas
AM Seekatz
AR Weingarden
AR Weingarden
C Serena
C Staley
CA Cowardin
CG Buffie
CM Theriot
D Kao
D Shahinas
DN Gerding
E Nood van
EA Thevenot
EO Petrof
F Barbut
FC Lessa
GK Ma
I Youngster
I Youngster
J Collins
J Xia
JA Ferreyra
JA McDonald
JR Fletcher
JS Martin
KM Ng
KO Childress
L Dethlefsen
LJ Deakin
M Agrawal
M He
M Neumann-Schaal
MC Abt
MJ Hamilton
ML Jenior
ML Jenior
S Karlsson
S Munoz
S Yen
SA Kuehne
SH Cohen
SL Martz
SS Li
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
No full text
Crossref
Application of multivariate statistical techniques in microbial ecology
Author
Anderson MJ
Arthur D
+24 more
Braak CJ
Braak CJF
Clarke KR
Driver HE
Dugard P
Ester M
Fox J
Gokcen I
Hammer Ø
Hill MO
James G
Japkowicz N
Lockyear K
Lovell D
Mantel N
Perez‐Cobas AE
Rao CR
Shevlyakov G
Tobias RD
Tukey JW
Vapnik V
Welling M
Wold H
Zhang J
Publication venue
'Wiley'
Publication date
Field of study
No full text
Crossref
Antepartum Antibiotic Treatment Increases Offspring Susceptibility to Experimental Colitis: A Role of the Gut Microbiota
Author
A Chao
A Collignon
+67 more
A Mohammad
AA Villarreal
AE Perez-Cobas
AE Perez-Cobas
AM de Silva-Sanigorski
C Jernberg
C Lozupone
C Moon
C Palmer
Charles Noah Bernstein
DH Parks
E Khafipour
E Ricciotti
EA Westerbeek
Ehsan Khafipour
F Fouhy
F Sommer
G Biasucci
G Biasucci
G Faa
G Gorkiewicz
H Derakhshani
H Renz
HS Cooper
HS Deshmukh
J Metsälä
J Penders
J Penders
Jean-Eric Ghia
JG Caporaso
JG Caporaso
JG Caporaso
JHJ Droste
JR Verani
L Dethlefsen
LG Stensballe
M Anderson
M Fallani
Markus M. Heimesaat
MB Azad
MC Noverr
MG Dominguez-Bello
MGI Langille
MJ Blaser
MN Price
N. Eissa
Peris Mumbi Munyaka
R Li
R Murgas Torrazza
R Persaud
RC Edgar
RC Edgar
RR Persaud
Russell AR Bedford
S Arboleya
S El Aidy
S Tanaka
SE Roberts
SL Russell
SY Shaw
T Magoč
TP Ley RE
TZ DeSantis
V Flenady
W Murk
WI Khan
XC Morgan
Publication venue
'Public Library of Science (PLoS)'
Publication date
Field of study
No full text
Crossref
Response of the gut microbiota during the Clostridioides difficile infection in tree shrews mimics those in humans
Author
A Klindworth
AE Perez-Cobas
+46 more
AE Reeves
C Milani
C Quast
Caixia Lu
CG Buffie
CL Ross
CM Theriot
CM Theriot
Dexuan Kuang
DR Knight
EL Best
F Liao
H Jin
J Suo
J Zhang
JG Bartlett
JG Caporaso
Jiejie Dai
Jinxing Lu
JM Pickard
KA Davies
M Warny
MA Engevik
MC Rea
ML Hutton
N Kamada
Na Li
Pinfen Tong
R Schmieder
RC Edgar
SK Lim
TD Lawley
VC Antharam
W Gu
Wenge Li
Wenguang Wang
Wenpeng Gu
Wenzhu Zhang
X Chen
Xiaomei Sun
XS Liu
Y Cao
Y Fan
YG Yao
Yuan Wu
Yuanyuan Han
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
No full text
Crossref
Effect of Intestinal Microbiota Alteration on Hepatic Damage in Rats with Acute Rejection After Liver Transplantation
Author
A Danielsson
A Pronio
+39 more
AD So
AE Perez-Cobas
Biao Zhu
Bing Ruan
C Giacinto Di
EM Quigley
F Guarner
FA Romero
G Muyzer
H Gill
Haiyin Jiang
HC Xing
Huazhong Chen
II Ivanov
J Li
JC Marshall
Jiezuan Yang
K Geboes
L Barkholt
Lanjuan Li
M Lorea Baroja
Min Deng
MS Roberts
N Kamada
N Rayes
N Rayes
N Safdar
Nan Qin
P Lepage
P Seksik
Xiangfei Xu
Yirui Xie
YR Xie
YR Xie
YT Li
Yunbo Chen
Z Yu
Zhengfeng Li
ZW Wu
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
No full text
Crossref
Gut Bacterial Microbiota and its Resistome Rapidly Recover to Basal State Levels after Short-term Amoxicillin-Clavulanic Acid Treatment in Healthy Adults
Author
A Croswell
AE Perez-Cobas
+39 more
AG McArthur
AI Saeed
AL Hartman
AR White
B Liu
BP Willing
D Ulluwishewa
DA Antonopoulos
E Yergeau
G Peterson
HE Jakobsson
I Sekirov
J Plaza-Diaz
J Tremblay
JG Bartlett
JG Caporaso
JG Frye
JP Zackular
K Forslund
K Pallav
KA Kleinheinz
L Dethlefsen
L Dethlefsen
M Evans
M Gillies
M Huntemann
MD Robinson
N Lu
Q Wang
RE Ley
S Bartosch
S Forssten
SA Bustin
SK Gupta
TZ DeSantis
V Stadlbauer
W Schaik van
Y Hu
YJ Zhang
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
No full text
Crossref
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