A single transcription factor is sufficient to induce and maintain secretory cell architecture

We hypothesized that basic helix–loop–helix (bHLH) MIST1 (BHLHA15) is a “scaling factor” that universally establishes secretory morphology in cells that perform regulated secretion. Here, we show that targeted deletion of MIST1 caused dismantling of the secretory apparatus of diverse exocrine cells. Parietal cells (PCs), whose function is to pump acid into the stomach, normally lack MIST1 and do not perform regulated secretion. Forced expression of MIST1 in PCs caused them to expand their apical cytoplasm, rearrange mitochondrial/lysosome trafficking, and generate large secretory granules. Mist1 induced a cohort of genes regulated by MIST1 in multiple organs but did not affect PC function. MIST1 bound CATATG/CAGCTG E boxes in the first intron of genes that regulate autophagosome/lysosomal degradation, mitochondrial trafficking, and amino acid metabolism. Similar alterations in cell architecture and gene expression were also caused by ectopically inducing MIST1 in vivo in hepatocytes. Thus, MIST1 is a scaling factor necessary and sufficient by itself to induce and maintain secretory cell architecture. Our results indicate that, whereas mature cell types in each organ may have unique developmental origins, cells performing similar physiological functions throughout the body share similar transcription factor-mediated architectural “blueprints.

Vortex in a d-wave superconductor at low temperatures

A systematic perturbation theory is developed to describe the magnetic field-induced subdominant $s$- and $d_{xy}$-wave order parameters in the mixed state of a $d_{x^2-y^2}$-wave superconductor, enabling us to obtain, within weak-coupling BCS theory, analytic results for the free energy of a d-wave superconductor in an applied magnetic field H_{c1}\ltsim H\ll H_{c2} from $T_c$ down to very low temperatures. Known results for a single isolated vortex in the Ginzburg-Landau regime are recovered, and the behavior at low temperatures for the subdominant component is shown to be qualitatively different. In the case of subdominant $d_{xy}$ pair component, superfluid velocity gradients and an orbital Zeeman effect are shown to compete in determining the vortex state, but for realistic field strengths the latter appears to be irrelevant. On this basis, we argue that recent predictions of a low-temperature phase transition in connection with recent thermal conductivity measurements are unlikely to be correct.Comment: 20 RevTEX pages, 6 EPS figures; considerably expanded versio

Adjusting aggregation modes and photophysical and photovoltaic properties of diketopyrrolopyrrole-based small molecules by introducing B←N bonds

The packing mode of small-molecular semiconductors in thin films is an important factor that controls the performance of their optoelectronic devices. Designing and changing the packing mode by molecular engineering is challenging. Three structurally related diketopyrrolopyrrole (DPP)-based compounds were synthesized to study the effect of replacing C−C bonds by isoelectronic dipolar B←N bonds. By replacing one of the bridging C−C bonds on the peripheral fluorene units of the DPP molecules by a coordinative B←N bond and changing the B←N bond orientation, the optical absorption, fluorescence, and excited-state lifetime of the compounds can be tuned. The substitution alters the preferential aggregation of the molecules in the solid state from H-type (for C−C) to J-type (for B←N). Introducing B←N bonds thus provides a subtle way of controlling the packing mode. The photovoltaic properties of the compounds were evaluated in bulk heterojunctions with a fullerene acceptor and showed moderate performance as a consequence of suboptimal morphologies, bimolecular recombination, and triplet-state formation

Statistical Determination of Bulk Flow Motions

We present here a new parameterization for the bulk motions of galaxies and clusters (in the linear regime) that can be measured statistically from the shape and amplitude of the two-dimensional two-point correlation function. We further propose the one-dimensional velocity dispersion (v_p) of the bulk flow as a complementary measure of redshift-space distortions, which is model-independent and not dependent on the normalisation method. As a demonstration, we have applied our new methodology to the C4 cluster catalogue constructed from Data Release Three (DR3) of the Sloan Digital Sky Survey. We find v_p=270^{+433}km/s (also consistent with v_p=0) for this cluster sample (at z=0.1), which is in agreement with that predicted for a WMAP5-normalised LCDM model (i.e., v_p(LCDM=203km/s). This measurement does not lend support to recent claims of excessive bulk motions (\simeq1000 km/s) which appear in conflict with LCDM, although our large statistical error cannot rule them out. From the measured coherent evolution of v_p, we develop a technique to re-construct the perturbed potential, as well as estimating the unbiased matter density fluctuations and scale--independent bias.Comment: 8 pages, 5 figure

A step towards testing general relativity using weak gravitational lensing and redshift surveys

Using the linear theory of perturbations in General Relativity, we express a set of consistency relations that can be observationally tested with current and future large scale structure surveys. We then outline a stringent model-independent program to test gravity on cosmological scales. We illustrate the feasibility of such a program by jointly using several observables like peculiar velocities, galaxy clustering and weak gravitational lensing. After addressing possible observational or astrophysical caveats like galaxy bias and redshift uncertainties, we forecast in particular how well one can predict the lensing signal from a cosmic shear survey using an over-lapping galaxy survey. We finally discuss the specific physics probed this way and illustrate how $f(R)$ gravity models would fail such a test.Comment: 12 pages, 10 figure

Base cations and micronutrients in soil aggregates as affected by enhanced nitrogen and water inputs in a semi-arid steppe grassland

The intensification of grassland management by nitrogen (N) fertilization and irrigation may threaten the future integrity of fragile semi-arid steppe ecosystems by affecting the concentrations of base cation and micronutrient in soils. We extracted base cations of exchangeable calcium (Ca), magnesium (Mg), potassium (K), and sodium (Na) and extractable micronutrients of iron (Fe), manganese (Mn), copper (Cu), and zinc (Zn) from three soil aggregate sizes classes (microaggregates, 2 mm) from a 9-year N and water field manipulation study. There were significantly more base cations (but not micronutrients) in microaggregates compared to macroaggregates which was related to greater soil organic matter and clay contents. Nitrogen addition significantly decreased exchangeable Ca by up to 33% in large and small macroaggregates and exchangeable Mg by up to 27% in three aggregates but significantly increased extractable Fe, Mn and Cu concentrations (by up to 262%, 150%, and 55%, respectively) in all aggregate size classes. However, water addition only increased exchangeable Na, while available Fe and Mn were decreased by water addition when averaging across all N treatments and aggregate classes. The loss of exchangeable Ca and Mg under N addition and extractable Fe and Mn in soil aggregates under water addition might potentially constrain the productivity of this semi-arid grassland ecosystem

Resultant pressure distribution pattern along the basilar membrane in the spiral shaped cochlea

Cochlea is an important auditory organ in the inner ear. In most mammals, it is coiled as a spiral. Whether this specific shape influences hearing is still an open problem. By employing a three dimensional fluid model of the cochlea with an idealized geometry, the influence of the spiral geometry of the cochlea is examined. We obtain solutions of the model through a conformal transformation in a long-wave approximation. Our results show that the net pressure acting on the basilar membrane is not uniform along its spanwise direction. Also, it is shown that the location of the maximum of the spanwise pressure difference in the axial direction has a mode dependence. In the simplest pattern, the present result is consistent with the previous theory based on the WKB-like approximation [D. Manoussaki, Phys. Rev. Lett. 96, 088701(2006)]. In this mode, the pressure difference in the spanwise direction is a monotonic function of the distance from the apex and the normal velocity across the channel width is zero. Thus in the lowest order approximation, we can neglect the existance of the Reissner's membrane in the upper channel. However, higher responsive modes show different behavior and, thus, the real maximum is expected to be located not exactly at the apex, but at a position determined by the spiral geometry of the cochlea and the width of the cochlear duct. In these modes, the spanwise normal velocities are not zero. Thus, it indicates that one should take into account of the detailed geometry of the cochlear duct for a more quantitative result. The present result clearly demonstrates that not only the spiral geometry, but also the geometry of the cochlear duct play decisive roles in distributing the wave energy.Comment: 21 pages. (to appear in J. Biol. Phys.

Fractionalization patterns in strongly correlated electron systems: Spin-charge separation and beyond

We discuss possible patterns of electron fractionalization in strongly interacting electron systems. A popular possibility is one in which the charge of the electron has been liberated from its Fermi statistics. Such a fractionalized phase contains in it the seed of superconductivity. Another possibility occurs when the spin of the electron, rather than its charge, is liberated from its Fermi statistics. Such a phase contains in it the seed of magnetism, rather than superconductivity. We consider models in which both of these phases occur and study possible phase transitions between them. We describe other fractionalized phases, distinct from these, in which fractions of the electron themselves fractionalize, and discuss the topological characterization of such phases. These ideas are illustrated with specific models of p-wave superconductors, Kondo lattices, and coexistence between d-wave superconductivity and antiferromagnetism.Comment: 28 pages, 11 fig

How Photogenerated I₂ Induces I-Rich Phase Formation in Lead Mixed Halide Perovskites

Bandgap tunability of lead mixed halide perovskites (LMHPs) is a crucial characteristic for versatile optoelectronic applications. Nevertheless, LMHPs show the formation of iodide-rich (I-rich) phase under illumination, which destabilizes the semiconductor bandgap and impedes their exploitation. Here, it is shown that how I2, photogenerated upon charge carrier trapping at iodine interstitials in LMHPs, can promote the formation of I-rich phase. I2 can react with bromide (Br−) in the perovskite to form a trihalide ion I2Br− (Iδ−-Iδ+-Brδ−), whose negatively charged iodide (Iδ−) can further exchange with another lattice Br− to form the I-rich phase. Importantly, it is observed that the effectiveness of the process is dependent on the overall stability of the crystalline perovskite structure. Therefore, the bandgap instability in LMHPs is governed by two factors, i.e., the density of native defects leading to I2 production and the Br− binding strength within the crystalline unit. Eventually, this study provides rules for the design of chemical composition in LMHPs to reach their full potential for optoelectronic devices.</p

Horizontal Branch Stars: The Interplay between Observations and Theory, and Insights into the Formation of the Galaxy

We review HB stars in a broad astrophysical context, including both variable and non-variable stars. A reassessment of the Oosterhoff dichotomy is presented, which provides unprecedented detail regarding its origin and systematics. We show that the Oosterhoff dichotomy and the distribution of globular clusters (GCs) in the HB morphology-metallicity plane both exclude, with high statistical significance, the possibility that the Galactic halo may have formed from the accretion of dwarf galaxies resembling present-day Milky Way satellites such as Fornax, Sagittarius, and the LMC. A rediscussion of the second-parameter problem is presented. A technique is proposed to estimate the HB types of extragalactic GCs on the basis of integrated far-UV photometry. The relationship between the absolute V magnitude of the HB at the RR Lyrae level and metallicity, as obtained on the basis of trigonometric parallax measurements for the star RR Lyrae, is also revisited, giving a distance modulus to the LMC of (m-M)_0 = 18.44+/-0.11. RR Lyrae period change rates are studied. Finally, the conductive opacities used in evolutionary calculations of low-mass stars are investigated. [ABRIDGED]Comment: 56 pages, 22 figures. Invited review, to appear in Astrophysics and Space Scienc