Effect of homogenisation conditions on recrystallisation in the Al-Mg-Mn alloy AA5454

The purpose of the present work is to understand the microstructure development and, particularly, to control the progress of recrystallisation in hot strip in the Al-Mg-Mn alloy AA 5454, which is typically used for the manufacture of structural automotive components. The chemical composition, together with the thermomechanical processing history of this material, has a strong influence on the microstructure of the product and the resulting properties as it is supplied to the customer. Electrical conductivity measurements, thermal analysis and electron microscopy have been carried out to characterise the evolution of precipitation state at various stages in the processing route. The conditions of the homogenisation heat treatment have been varied, and the effect on subsequent recrystallisation after hot rolling has been evaluated in both the as cast and rough rolled condition by optical microscopy techniques. Results indicate that the conditions of homogenisation heat treatment and roughing rolling are critical for the generation of a suitable recrystallised microstructure in AA 5454 hot strip. A new two stage homogenisation practice has been developed to expedite post-rolling recrystallisation in this alloy

Is Clostridium difficile associated with the '4C' antibiotics? A retrospective observational study in diabetic foot ulcer patients

AIMS: Clostridium difficile is an anaerobic cytotoxin-producing bacterium that can cause infectious diarrhoea, pseudomembranous colitis and toxic megacolon. The major risk factors for developing C. difficile infection include recent or current antimicrobial use, diabetes, age over 65, proton pump inhibitor use, immunosuppression and previous infection with C. difficile. Most diabetic foot ulcers are polymicrobial. METHODS: As a result guidelines advise treatment with broad spectrum antibiotics which include the ‘4C's’ (clindamycin, cephalosporins, co-amoxiclav and ciprofloxacin) which are associated with a higher risk of C. difficile infection. Retrospective observational data (June 2008 to January 2012) for the diabetes foot ulcers were gathered from the Diabetes/Podiatry Clinic database in NHS Ayrshire and Arran and cross-matched with the NHS Ayrshire and Arran Microbiology database. There were 111 patients with mean age 59 years (range 24–94 years), 33 type 1 patients, 78 type 2 patients, mean duration of diabetes 16 years (6 months–37 years) and mean HbA(1c) 67 mmol/mol (54–108 mmol/mol) [8.3% (7.1–12%)]. RESULTS: The total number of days antimicrobials prescribed for all patients was 7938 (mean number of antimicrobial days per patient = 71.5 days). There was one case of C. difficile infection of 111 patients giving an incidence of 1.25 cases per 10,000 patient-days of antibiotics/1 case per 209 foot ulcers. CONCLUSIONS: Large doses, numbers and greater duration of antibiotic therapy all result in a greater degree of normal gut flora depletion. It is possible that the alterations in gut flora in diabetic foot ulcer patients protect them from antibiotic-induced C. difficile overgrowth

Stochastic errors in quantum instruments

Fault-tolerant quantum computation requires non-destructive quantum measurements with classical feed-forward. Many experimental groups are actively working towards implementing such capabilities and so they need to be accurately evaluated. As with unitary channels, an arbitrary imperfect implementation of a quantum instrument is difficult to analyze. In this paper, we define a class of quantum instruments that correspond to stochastic errors and thus are amenable to standard analysis methods. We derive efficiently computable upper- and lower-bounds on the diamond distance between two quantum instruments. Furthermore, we show that, for the special case of uniform stochastic instruments, the diamond distance and the natural generalization of the process infidelity to quantum instruments coincide and are equal to a well-defined probability of an error occurring during the measurement

Fractionation of arsenic in soil by a continuous-flow sequential extraction method

Batch sequential extraction techniques for fractionating metals or metalloids in soils are time consuming and subject to several potential errors. The development of a continuous-flow sequential extraction method for soil As is described and assessed, having the benefits of simplicity, rapidity, less risk of contamination, and less vulnerability to changes in extraction conditions compared with traditional batch methods. The validated method was used to fractionate soil As using water, NaHCO₃, NaOH, and HCl, followed by digestion of the residue with HNO₃, and HF acids. The extracts and digests were analyzed for As by graphite furnace atomic absorption spectrometry. Good recoveries of total soil As (97–115%) were obtained and fractionation data generally comparable with those obtained using conventional batch techniques. Soils from a tin-mining area in Thailand and soils from As-contaminated cattle (Bos taurus) dip sites in Australia were used to test the applicability of the method, and to demonstrate the usefulness of the extractogram obtained. The ability to produce detailed extractograms for As and other elements (Al, Fe, and Ca) enabled an examination of elemental associations in individual fractions. With the exception of As extracted with HCl, the extractograms generally support previous suggestions of the likely forms or associations of As present in the different soil fractions

Imaging in the evaluation of renovascular disease

Renovascular disease (RVD) is an important cause of hypertension in children, as it often is amenable to potentially curative treatment. Imaging aimed at finding RVD therefore needs to have high sensitivity so as not to miss important findings. Digital subtraction angiography is the gold standard investigation. Doppler ultrasonography, computed tomography (CT) angiography and magnetic resonance (MR) angiography can all be helpful, but none has, at present, high enough sensitivity to rule out RVD in a child with a suggestion of that diagnosis

Analysis of stop-gain and frameshift variants in human innate immunity genes.

Loss-of-function variants in innate immunity genes are associated with Mendelian disorders in the form of primary immunodeficiencies. Recent resequencing projects report that stop-gains and frameshifts are collectively prevalent in humans and could be responsible for some of the inter-individual variability in innate immune response. Current computational approaches evaluating loss-of-function in genes carrying these variants rely on gene-level characteristics such as evolutionary conservation and functional redundancy across the genome. However, innate immunity genes represent a particular case because they are more likely to be under positive selection and duplicated. To create a ranking of severity that would be applicable to innate immunity genes we evaluated 17,764 stop-gain and 13,915 frameshift variants from the NHLBI Exome Sequencing Project and 1,000 Genomes Project. Sequence-based features such as loss of functional domains, isoform-specific truncation and nonsense-mediated decay were found to correlate with variant allele frequency and validated with gene expression data. We integrated these features in a Bayesian classification scheme and benchmarked its use in predicting pathogenic variants against Online Mendelian Inheritance in Man (OMIM) disease stop-gains and frameshifts. The classification scheme was applied in the assessment of 335 stop-gains and 236 frameshifts affecting 227 interferon-stimulated genes. The sequence-based score ranks variants in innate immunity genes according to their potential to cause disease, and complements existing gene-based pathogenicity scores. Specifically, the sequence-based score improves measurement of functional gene impairment, discriminates across different variants in a given gene and appears particularly useful for analysis of less conserved genes

Genome-wide association studies of parasite resistance, productivity and immunology traits in meat in Scottish Blackface sheep

Gastrointestinal parasitism represents a global problem for grazing ruminants, which can be addressed sustainably by breeding animals to be more resistant against infection by parasites. The aim of this study was to assess the genetic architecture underlying traits associated with gastrointestinal parasite resistance, immunological profile and production in meat sheep, and identify and characterise candidate genes affecting these traits. Data on gastrointestinal parasite infection (faecal egg counts for Strongyles (FECS) and Nematodirus (FECN) and faecal oocyst counts for Coccidia, along with faecal soiling scores (DAG), characterised by the accumulation of faeces around the perineum) and production (live weight (LWT)) were gathered from a flock Scottish Blackface lambs at three and four months of age. Data on the immune profile were also collected from a subset of these lambs at two and five months of age. Immune traits included the production of Interferon-γ (IFN-γ), Interleukin (IL)-4 and IL-10 following stimulation of whole blood with pokeweed mitogen (PWM) or antigen from the gastric parasite Teladorsagia circumcincta (T-ci), and serum levels of T. circumcincta-specific immunoglobulin A (IgA). Animals were genotyped with genome-wide DNA arrays, and a total of 1 766 animals and 45 827 Single Nucleotide Polymorphisms (SNPs) were retained following quality control and imputation. Genome-wide association studies were performed for 24 traits. The effects of individual markers with significant effects were estimated, and the genotypic effect solutions were used to estimate additive and dominance effects, and the proportion of additive genetic variance attributed to each SNP locus. A total of 15 SNPs were associated at least at a suggestive level with FECS, FECN, DAG, IgA, PWM-induced IFN-γ and IL-4, and T-ci-induced IL-10. This study uncovered 52 genes closely related to immune function in proximity to these SNPs. A number of genes encoding C-type lectins and killer cell lectin-like family members were close to a SNP associated with FECN while several genes encoding IL-1 cytokine family members were found to be associated with IgA. Potential candidate genes belonging to or in close proximity with the Major Histocompatibility Complex (MHC) were revealed, including Homeostatic Iron Regulator and butyrophilin coding genes associated with IFN-γ(PWM), and IL-17 coding genes associated with IgA. Due to the importance of the MHC in the control of immune responses, these genes may play an important role in resistance to parasitic infections. Our results reveal a largely complex and polygenic genetic profile of the studied traits in this Scottish Blackface sheep population.</p