Improving medical image perception by hierarchical clustering based segmentation

It has been well documented that radiologists' performance is not perfect: they make both false positive and false negative decisions. For example, approximately thirty percent of early lung cancer is missed on chest radiographs when the evidence is clearly visible in retrospect. Currently computer-aided detection (CAD) uses software, designed to reduce errors by drawing radiologists' attention to possible abnormalities by placing prompts on images. Alberdi et al examined the effects of CAD prompts on performance, comparing the negative effect of no prompt on a cancer case with prompts on a normal case. They showed that no prompt on a cancer case can have a detrimental effect on reader sensitivity and that the reader performs worse than if the reader was not using CAD. This became particularly apparent when difficult cases were being read. They suggested that the readers were using CAD as a decision making tool instead of a prompting aid. They conclude that "incorrect CAD can have a detrimental effect on human decisions". The goal of this paper is to explore the possibility of using hierarchical clustering based segmentation (HSC), as a perceptual aid, to improve the performance of the reader

Zero tension Kardar-Parisi-Zhang equation in (d+1)- Dimensions

The joint probability distribution function (PDF) of the height and its gradients is derived for a zero tension $d+1$-dimensional Kardar-Parisi-Zhang (KPZ) equation. It is proved that the height`s PDF of zero tension KPZ equation shows lack of positivity after a finite time $t_{c}$. The properties of zero tension KPZ equation and its differences with the case that it possess an infinitesimal surface tension is discussed. Also potential relation between the time scale $t_{c}$ and the singularity time scale $t_{c, \nu \to 0}$ of the KPZ equation with an infinitesimal surface tension is investigated.Comment: 18 pages, 8 figure

Bakhtiari, Leskinen and Torma Reply

This is a Reply to: Comment on "Spectral Signatures of the Fulde-Ferrell-Larkin-Ovchinnikov Order Parameter in One-Dimensional Optical Lattices" R. A. Molina J. Dukelksy, and P. Schmitteckert, Phys. Rev. Lett. 102, 168901 (2009)Comment: 1 page, published versio

Detection of human papillomavirus DNA in intraosseus ameloblastoma

Human Papillomavirus (HPV) infection has been shown as a risk factor in oral carcinogenesis. The association between HPV and benign and malignant neoplasm of oral mucosa, especially surface epithelium-derived tumors, is well established. The role of HPV in pathogenesis of odontogenic cysts and tumors has been published in few articles. The aim of this study was detection of HPV in Iranian patients with intrabony ameloblastoma and investigation of specific risk factors associated with ameloblastoma. One hundred intrabony ameloblastoma and 50 age-sex matched samples as controls were evaluated by polymerase chain reaction for the detection and typing of HPV. Fisher exact and chi square tests were used to assess the data. HPV DNA was detected in 32% of patients and 10% of controls. HPV-6 was the most prevalent genotype (31.6%) in infected cases. It was followed by HPV-11 (12.5%), HPV-16 (12.5%) and HPV-31 (3.1%). We found a significant association between presence of HPV and location of tumor (p = 0.02), traumatic history (p = 0.03) and ododontic therapy (p = 0.01). These findings indicated that HPV-6 probably is one of the most important etiologic agents in causing intraosseous ameloblastoma in Iranian population. © 2006 Academic Journals Inc., USA

Pomeranchuk effect and spin-gradient cooling of Bose-Bose mixtures in an optical lattice

We theoretically investigate finite-temperature thermodynamics and demagnetization cooling of two-component Bose-Bose mixtures in a cubic optical lattice, by using bosonic dynamical mean field theory (BDMFT). We calculate the finite-temperature phase diagram, and remarkably find that the system can be heated from the superfluid into the Mott insulator at low temperature, analogous to the Pomeranchuk effect in 3He. This provides a promising many-body cooling technique. We examine the entropy distribution in the trapped system and discuss its dependence on temperature and an applied magnetic field gradient. Our numerical simulations quantitatively validate the spin-gradient demagnetization cooling scheme proposed in recent experiments.Comment: 9 pages, 8 figure

The dynamics of liquid slugs forced by a syringe pump

Microfluidic processes for chemical synthesis have become popular in recent years. The small scale of the chemical reactions promise greater control over reaction conditions and more timely creation of products. The small scale of microfluidics poses its own set of problems, however. At the microscale, the dominant fluid forces are viscous resistance and surface tension. The effects of viscosity and scale reduce the Reynolds number and make mixing difficult. Much work has been done to control mixing at the microscale. This problem is concerned with a different microfluidic problem: delivering reactants to the site of reaction. A common setup is to attach syringes full of reactant to a reaction chamber by narrow hydrophobic tubing. Using a stepper motor, a controlled dose of liquid may be injected into the tube. The hydrophobosity causes the dose to curve outward on the sides, becoming a "slug" of reactant with air in front and behind. The syringe at the rear is then switched for one full of air, and air pressure is used to drive the slug to the reaction site. If too much pressure is applied, the slug will arrive with a significant back pressure that will be relieved through bubbling in the reaction site. This causes the formation of a foam and is highly undesirable. We present a simple model based on Boyle’s law for the motion of a slug through a tube. We then extend this model for trains of slugs separated by air bubbles. Last, we consider the case of a flooded reaction site, where the forward air bubble must be pushed through the flooding liquid. In conclusion, we have determined the dynamics of a single slug moving towards an empty reaction chamber giving the final equilibrium position of the slug. A phase-plane analysis then determined a condition on the size of the slug needed to ensure that it comes to rest without oscillating about the equilibrium position. The effect of a flooded reaction chamber was then considered. In this case it is impossible to avoid bubbling due to the design of the device. We found that it is possible, however, to reduce the bubbling by minimising the back pressure behind the slug. Finally, the dynamics of multiple slugs with or without a flooded reaction chamber has been investigated