22 research outputs found

    Alternative splicing modulation by G-quadruplexes.

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    Alternative splicing is central to metazoan gene regulation, but the regulatory mechanisms are incompletely understood. Here, we show that G-quadruplex (G4) motifs are enriched ~3-fold near splice junctions. The importance of G4s in RNA is emphasised by a higher enrichment for the non-template strand. RNA-seq data from mouse and human neurons reveals an enrichment of G4s at exons that were skipped following depolarisation induced by potassium chloride. We validate the formation of stable RNA G4s for three candidate splice sites by circular dichroism spectroscopy, UV-melting and fluorescence measurements. Moreover, we find that sQTLs are enriched at G4s, and a minigene experiment provides further support for their role in promoting exon inclusion. Analysis of >1,800 high-throughput experiments reveals multiple RNA binding proteins associated with G4s. Finally, exploration of G4 motifs across eleven species shows strong enrichment at splice sites in mammals and birds, suggesting an evolutionary conserved splice regulatory mechanism

    Electronic Spectra of Cs<sub>2</sub>NaYb(NO<sub>2</sub>)<sub>6</sub>: Is There Quantum Cutting?

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    The crystal structure and electronic spectra of the <i>T</i><sub><i>h</i></sub> symmetry hexanitritoytterbate­(III) anion have been studied in Cs<sub>2</sub>NaY<sub>0.96</sub>Yb<sub>0.04</sub>(NO<sub>2</sub>)<sub>6</sub>, which crystallizes in the cubic space group <i>Fm</i>3̅. The emission from Yb<sup>3+</sup> can be excited via the NO<sub>2</sub><sup>–</sup> antenna. The latter electronic transition is situated at more than twice the energy of the former, but at room temperature, one photon absorbed at 470 nm in the triplet state produces no more than one photon emitted. Some degree of quantum cutting is observed at 298 K under 420 nm excitation into the singlet state and at 25 K using excitation into either state. The quantum efficiency is ∼10% at 25 K. The energy level scheme of Yb<sup>3+</sup> has been deduced from excitation and emission spectra and calculated by crystal field theory. New improved energy level calculations are also reported for the Cs<sub>2</sub>NaLn­(NO<sub>2</sub>)<sub>6</sub> (Ln = Pr, Eu, Tb) series using the <i>f</i>-<i>Spectra</i> package. The neat crystal Cs<sub>2</sub>NaYb­(NO<sub>2</sub>)<sub>6</sub> has also been studied, but results were unsatisfactory due to sample decomposition, and this chemical instability makes it unsuitable for applications
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