Unzipping flux lines from extended defects in type-II superconductors

With magnetic force microscopy in mind, we study the unbinding transition of individual flux lines from extended defects like columnar pins and twin planes in type II superconductors. In the presence of point disorder, the transition is universal with an exponent which depends only on the dimensionality of the extended defect. We also consider the unbinding transition of a single vortex line from a twin plane occupied by other vortices. We show that the critical properties of this transition depend strongly on the Luttinger liquid parameter which describes the long distance physics of the two-dimensional flux line array.Comment: 5 pages, 4 figure

Melting and unzipping of DNA

Experimental studies of the thermal denaturation of DNA yield a strong indication that the transition is first order. This transition has been theoretically studied since the early sixties, mostly within an approach in which the microscopic configurations of a DNA molecule are given by an alternating sequence of non-interacting bound segments and denaturated loops. Studies of these models neglect the repulsive, self-avoiding, interaction between different loops and segments and have invariably yielded continuous denaturation transitions. In this study we exploit recent results on scaling properties of polymer networks of arbitrary topology in order to take into account the excluded-volume interaction between denaturated loops and the rest of the chain. We thus obtain a first-order phase transition in d=2 dimensions and above, in agreement with experiments. We also consider within our approach the unzipping transition, which takes place when the two DNA strands are pulled apart by an external force acting on one end. We find that the unzipping transition is also first order. Although the denaturation and unzipping transitions are thermodynamically first order, they do exhibit critical fluctuations in some of their properties. For instance, the loop size distribution decays algebraically at the transition and the length of the denaturated end segment diverges as the transition is approached. We evaluate these critical properties within our approach.Comment: 12pages,8 figures, REVTEX

Tug-of-war in motility assay experiments

The dynamics of two groups of molecular motors pulling in opposite directions on a rigid filament is studied theoretically. To this end we first consider the behavior of one set of motors pulling in a single direction against an external force using a new mean-field approach. Based on these results we analyze a similar setup with two sets of motors pulling in opposite directions in a tug-of-war in the presence of an external force. In both cases we find that the interplay of fluid friction and protein friction leads to a complex phase diagram where the force-velocity relations can exhibit regions of bistability and spontaneous symmetry breaking. Finally, motivated by recent work, we turn to the case of motility assay experiments where motors bound to a surface push on a bundle of filaments. We find that, depending on the absence or the presence of a bistability in the force-velocity curve at zero force, the bundle exhibits anomalous or biased diffusion on long-time and large-length scales

Dinotefuran and Piperonyl Butoxide Mixture for The Extermination and Prevention of Ctenocephalides Canis and Ctenocephalides Felis Felis In Dogs And Cats

Ctenocephalides canis and Ctenocephalides felis felis are insects which are among the most common ectoparasites of common household dogs and cats. Flea killers have been developed for decades to counter this worldwide pest. It is a never-ending battle because of the continuous genetic resistance presented by the pest. In the present study, we applied a mixture of the pesticide Dinotefuran (26% w/v) and the synergist Piperonyl butoxide (6% w/v) to dogs (Solpreme Dogtrade and cats (Solpreme Cattrade) infested with the fleas via ldquoSpot onrdquo method. The treatment exterminated all of the fleas within 3 days (100%, plt 0.001). Re-infestation after 10 days caused an increase in the number of fleas, yet most of the effect lasted for at least 30 days. Further tests showed that the treatment is safe, water resistant, and has a long shelf life. The development of this novel mixture of substances provides an effective, safe means in the struggle with the continuous development of resistance to pesticides among major skin parasites

Structure factor and dynamics of the helix-coil transition

Thermodynamical properties of the helix-coil transition were successfully described in the past by the model of Lifson, Poland and Sheraga. Here we compute the corresponding structure factor and show that it possesses a universal scaling behavior near the transition point, even when the transition is of first order. Moreover, we introduce a dynamical version of this model, that we solve numerically. A Langevin equation is also proposed to describe the dynamics of the density of hydrogen bonds. Analytical solution of this equation shows dynamical scaling near the critical temperature and predicts a gelation phenomenon above the critical temperature. In the case when comparison of the two dynamical approaches is possible, the predictions of our phenomenological theory agree with the results of the Monte Carlo simulations.Comment: 11 pages, 7 figure

Phase transition in a non-conserving driven diffusive system

An asymmetric exclusion process comprising positive particles, negative particles and vacancies is introduced. The model is defined on a ring and the dynamics does not conserve the number of particles. We solve the steady state exactly and show that it can exhibit a continuous phase transition in which the density of vacancies decreases to zero. The model has no absorbing state and furnishes an example of a one-dimensional phase transition in a homogeneous non-conserving system which does not belong to the absorbing state universality classes

Phase diagram for unzipping DNA with long-range interactions

We present a critique and extension of the mean-field approach to the mechanical pulling transition in bound polymer systems. Our model is motivated by the theoretically and experimentally important examples of adsorbed polymers and double-stranded DNA, and we focus on the case in which quenched disorder in the sequence of monomers is unimportant for the statistical mechanics. We show how including excluded volume interactions in the model affects the phase diagram for the critical pulling force, and we predict a re-entrancy phase at low temperatures which has not been previously discussed. We also consider the case of non-equilibrium pulling, in which the external force probes the local, rather than the global structure of the dsDNA or adsorbed polymer. The dynamics of the pulling transition in such experiments could illuminate the polymer's loop structure, which depends on the nature of excluded volume interactions.Comment: 4 pages, 2 figures; this version clarifies Eq. 8, and corrects errors in Fig.

Sequence heterogeneity and the dynamics of molecular motors

The effect of sequence heterogeneity on the dynamics of molecular motors is reviewed and analyzed using a set of recently introduced lattice models. First, we review results for the influence of heterogenous tracks such as a single-strand of DNA or RNA on the dynamics of the motors. We stress how the predicted behavior might be observed experimentally in anomalous drift and diffusion of motors over a wide range of parameters near the stall force and discuss the extreme limit of strongly biased motors with one-way hopping. We then consider the dynamics in an environment containing a variety of different fuels which supply chemical energy for the motor motion, either on a heterogeneous or on a periodic track. The results for motion along a periodic track are relevant to kinesin motors in a solution with a mixture of different nucleotide triphosphate fuel sources.Comment: To appear in a JPhys special issue on molecular motor