The High-Resolution Structures of the Neutral and the Low pH Crystals of Aminopeptidase from \u3cem\u3eAeromonas proteolytica\u3c/em\u3e

The aminopeptidase from Aeromonas proteolytica (AAP) contains two zinc ions in the active site and catalyzes the degradation of peptides. Herein we report the crystal structures of AAP at 0.95-Å resolution at neutral pH and at 1.24-Å resolution at low pH. The combination of these structures allowed the precise modeling of atomic positions, the identification of the metal bridging oxygen species, and insight into the physical properties of the metal ions. On the basis of these structures, a new putative catalytic mechanism is proposed for AAP that is likely relevant to all binuclear metalloproteases

Analysis of images recorded during welding processes,

Abstract In the paper elements of a system of assessment of a welding process and welded joints have been presented. The system was based on the application of one thermovision and two CCD cameras. In the paper exemplary results of processing and analysis of thermal and ordinary images have been discussed. Introduction The course of a welding process significantly influences the quality of welds. In order to obtain high quality joints proper parameters of welding process are required to be stable. In most cases by a correct welded joints one assumes the joints which are characterized not only by required mechanical properties but also by aesthetic quality. While the selection of proper welding parameters for an experienced welder does not make difficulties, the stability of these parameters is often not easy to be ensured. Abnormality of the process is caused by numerous factors which are often random. Examples are instability of passing of a filler wire, smudges of dirt, inaccuracy of preparation of element edges, deformations of elements as effects of thermal phenomena. These factors are reasons of common welding defects, such as excessive undercuts, partial or lack of joint penetration, cracks, overheatings, excessive convexity or concavity of a face of weld, blisters, bubbles and holes Maintenance of the high quality welding process and welds can be obtained by means of constant control of process parameters. One describes different approaches to the process inspection. Examples are measurements of amperage, voltage and flow of shielding gas The main problem concerning the application of vision systems seems to be a proper image analysis. In welding industry methods based on image analysis are being used for seam tracking Issues described in the paper are a part of investigations aimed at development of a system of controlling automatic welding processes. According to this approach, the vision system consists of three cameras. A crucial role is played be an IR camera, which observes a welding arc and pool, and the joint that is getting cold. Observation of the process is also aided by two CCD cameras, which record correspondingly images representing the arc and the joint. There are two goals of image analysis. The first one is to asses the stability of welding process, which is performed by means of determination of geometrical parameters of the arc. Secondly, some common defects of joints are supposed to be detected. It should be stressed that the application of IR camera lets us to detect not only surface defects but also defects and phenomena that do not manifest themselves on the surface. Presented experiments were carried out with the use of series of samples divided into some groups characterized by: correctly prepared surface, surface covered with rust, and parts covered with some impurities Overview of the vision system The welding process can be realized with the use of different devices. In industrial production automated and equipped with robots stands are commonly used, they enable MIG or MAG welding. Usually in such automated processes elements to be joined move and a welding device passing the filled wire is motionless. The vision system elaborated within the framework of the research described in the paper has been assigned to such processes. General overview of the system was presented in figure 1. The system let us to record, archive, process, analyze and recognize two types of images acquired by three presented cameras: -hot area that includes sub-areas of arc, metal in fluid and solidification phases and welded elements, -self-cooling area consisting of weld and welded elements sub-areas. The system has included hardware and software part

Kinetic, Spectroscopic, and X-ray Crystallographic Characterization of the Functional E151H Aminopeptidase from \u3cem\u3eAeromonas proteolytica\u3c/em\u3e

Glutamate151 (E151) has been shown to be catalytically essential for the aminopeptidase from Vibrio proteolyticus (AAP). E151 acts as the general acid/base during the catalytic mechanism of peptide hydrolysis. However, a glutamate residue is not the only residue capable of functioning as a general acid/base during catalysis for dinuclear metallohydrolases. Recent crystallographic characterization of the d-aminopeptidase from Bacillus subtilis (DppA) revealed a histidine residue that resides in an identical position to E151 in AAP. Because the active-site ligands for DppA and AAP are identical, AAP has been used as a model enzyme to understand the mechanistic role of H115 in DppA. Substitution of E151 with histidine resulted in an active AAP enzyme exhibiting a kcat value of 2.0 min-1, which is over 2000 times slower than r AAP (4380 min-1). ITC experiments revealed that ZnII binds 330 and 3 times more weakly to E151H-AAP compared to r-AAP. UV−vis and EPR spectra of CoII-loaded E151H-AAP indicated that the first metal ion resides in a hexacoordinate/pentacoordinate equilibrium environment, whereas the second metal ion is six-coordinate. pH dependence of the kinetic parameters kcat and Km for the hydrolysis of l-leucine p-nitroanilide (l-pNA) revealed a change in an ionization constant in the enzyme−substrate complex from 5.3 in r-AAP to 6.4 in E151H-AAP, consistent with E151 in AAP being the active-site general acid/base. Proton inventory studies at pH 8.50 indicate the transfer of one proton in the rate-limiting step of the reaction. Moreover, the X-ray crystal structure of [ZnZn(E151H-AAP)] has been solved to 1.9 Å resolution, and alteration of E151 to histidine does not introduce any major conformational changes to the overall protein structure or the dinuclear ZnII active site. Therefore, a histidine residue can function as the general acid/base in hydrolysis reactions of peptides and, through analogy of the role of E151 in AAP, H115 in DppA likely shuttles a proton to the leaving group of the substrate

Detection and diversity of a putative novel heterogeneous polymorphic proline-glycine repeat (Pgr) protein in the footrot pathogen Dichelobacter nodosus

Dichelobacter nodosus, a Gram-negative anaerobic bacterium, is the essential causative agent of footrot in sheep. Currently, depending on the clinical presentation in the field, footrot is described as benign or virulent; D. nodosus strains have also been classified as benign or virulent, but this designation is not always consistent with clinical disease. The aim of this study was to determine the diversity of the pgr gene, which encodes a putative proline-glycine repeat protein (Pgr). The pgr gene was present in all 100 isolates of D. nodosus that were examined and, based on sequence analysis had two variants, pgrA and pgrB. In pgrA, there were two coding tandem repeat regions, R1 and R2: different strains had variable numbers of repeats within these regions. The R1 and R2 were absent from pgrB. Both variants were present in strains from Australia, Sweden and the UK, however, only pgrB was detected in isolates from Western Australia. The pgrA gene was detected in D. nodosus from tissue samples from two flocks in the UK with virulent footrot and only pgrB from a flock with no virulent or benign footrot for >10 years. Bioinformatic analysis of the putative PgrA protein indicated that it contained a collagen-like cell surface anchor motif. These results suggest that the pgr gene may be a useful molecular marker for epidemiological studies

Different Perspectives of a Factory of the Future: An Overview

Digitalfactory,andCloudManufacturingaretwoapproaches that aim at addressing the Factory of the Future, i.e., to provide digital support to manufacturing factories. They find their roots in two different geographical areas, respectively Europe and China, and therefore presents some differences as well as the same goal of building the factory of the future. In this paper, we present both the digital factory and the cloud manufacturing approaches and discuss their differences

Pch2 Acts through Xrs2 and Tel1/ATM to Modulate Interhomolog Bias and Checkpoint Function during Meiosis

Proper segregation of chromosomes during meiosis requires the formation and repair of double-strand breaks (DSBs) to form crossovers. Repair is biased toward using the homolog as a substrate rather than the sister chromatid. Pch2 is a conserved member of the AAA+-ATPase family of proteins and is implicated in a wide range of meiosis-specific processes including the recombination checkpoint, maturation of the chromosome axis, crossover control, and synapsis. We demonstrate a role for Pch2 in promoting and regulating interhomolog bias and the meiotic recombination checkpoint in response to unprocessed DSBs through the activation of axial proteins Hop1 and Mek1 in budding yeast. We show that Pch2 physically interacts with the putative BRCT repeats in the N-terminal region of Xrs2, a member of the MRX complex that acts at sites of unprocessed DSBs. Pch2, Xrs2, and the ATM ortholog Tel1 function in the same pathway leading to the phosphorylation of Hop1, independent of Rad17 and the ATR ortholog Mec1, which respond to the presence of single-stranded DNA. An N-terminal deletion of Xrs2 recapitulates the pch2Δ phenotypes for signaling unresected breaks. We propose that interaction with Xrs2 may enable Pch2 to remodel chromosome structure adjacent to the site of a DSB and thereby promote accessibility of Hop1 to the Tel1 kinase. In addition, Xrs2, like Pch2, is required for checkpoint-mediated delay conferred by the failure to synapse chromosomes

Frequent and Efficient Use of the Sister Chromatid for DNA Double-Strand Break Repair during Budding Yeast Meiosis

Studies of DNA double-strand break repair during meiosis reveal that a substantial fraction of recombination occurs between sister chromatids

Meiotic Recombination Intermediates Are Resolved with Minimal Crossover Formation during Return-to-Growth, an Analogue of the Mitotic Cell Cycle

Accurate segregation of homologous chromosomes of different parental origin (homologs) during the first division of meiosis (meiosis I) requires inter-homolog crossovers (COs). These are produced at the end of meiosis I prophase, when recombination intermediates that contain Holliday junctions (joint molecules, JMs) are resolved, predominantly as COs. JM resolution during the mitotic cell cycle is less well understood, mainly due to low levels of inter-homolog JMs. To compare JM resolution during meiosis and the mitotic cell cycle, we used a unique feature of Saccharomyces cerevisiae, return to growth (RTG), where cells undergoing meiosis can be returned to the mitotic cell cycle by a nutritional shift. By performing RTG with ndt80 mutants, which arrest in meiosis I prophase with high levels of interhomolog JMs, we could readily monitor JM resolution during the first cell division of RTG genetically and, for the first time, at the molecular level. In contrast to meiosis, where most JMs resolve as COs, most JMs were resolved during the first 1.5–2 hr after RTG without producing COs. Subsequent resolution of the remaining JMs produced COs, and this CO production required the Mus81/Mms4 structure-selective endonuclease. RTG in sgs1-ΔC795 mutants, which lack the helicase and Holliday junction-binding domains of this BLM homolog, led to a substantial delay in JM resolution; and subsequent JM resolution produced both COs and NCOs. Based on these findings, we suggest that most JMs are resolved during the mitotic cell cycle by dissolution, an Sgs1 helicase-dependent process that produces only NCOs. JMs that escape dissolution are mostly resolved by Mus81/Mms4-dependent cleavage that produces both COs and NCOs in a relatively unbiased manner. Thus, in contrast to meiosis, where JM resolution is heavily biased towards COs, JM resolution during RTG minimizes CO formation, thus maintaining genome integrity and minimizing loss of heterozygosity