Overcome Competitive Exclusion in Ecosystems

Explaining biodiversity in nature is a fundamental problem in ecology. An outstanding challenge is embodied in the so-called Competitive Exclusion Principle: two species competing for one limiting resource cannot coexist at constant population densities, or more generally, the number of consumer species in steady coexistence cannot exceed that of resources. The fact that competitive exclusion is rarely observed in natural ecosystems has not been fully understood. Here we show that by forming chasing triplets among the consumers and resources in the consumption process, the Competitive Exclusion Principle can be naturally violated. The modeling framework developed here is broadly applicable and can be used to explain the biodiversity of many consumer-resource ecosystems and hence deepens our understanding of biodiversity in nature.Comment: Manuscript 13 pages, 10 figures; SI 15 pages, 8 figure

Limit cycles can reduce the width of the habitable zone

The liquid water habitable zone (HZ) describes the orbital distance at which a terrestrial planet can maintain above-freezing conditions through regulation by the carbonate-silicate cycle. Recent calculations have suggested that planets in the outer regions of the habitable zone cannot maintain stable, warm climates, but rather should oscillate between long, globally glaciated states and shorter periods of climatic warmth. Such conditions, similar to 'Snowball Earth' episodes experienced on Earth, would be inimical to the development of complex land life, including intelligent life. Here, we build upon previous studies with an updated an energy balance climate model to calculate this 'limit cycle' region of the habitable zone where such cycling would occur. We argue that an abiotic Earth would have a greater CO$_2$ partial pressure than today because plants and other biota help to enhance the storage of CO$_2$ in soil. When we tune our abiotic model accordingly, we find that limit cycles can occur but that previous calculations have overestimated their importance. For G stars like the Sun, limit cycles occur only for planets with CO$_2$ outgassing rates less than that on modern Earth. For K and M star planets, limit cycles should not occur; however, M-star planets may be inhospitable to life for other reasons. Planets orbiting late G-type and early K-type stars retain the greatest potential for maintaining warm, stable conditions. Our results suggest that host star type, planetary volcanic activity, and seafloor weathering are all important factors in determining whether planets will be prone to limit cycling.Comment: Accepted for publication in The Astrophysical Journal. 25 pages, 5 figure

The Relative Influences of Climate and Competition on Tree Growth along Montane Ecotones in the Rocky Mountains

Distribution shifts of tree species are likely to be highly dependent upon population performance at distribution edges. Understanding the drivers of aspects of performance, such as growth, at distribution edges is thus crucial to accurately predicting responses of tree species to climate change. Here, we use a Bayesian model and sensitivity analysis to partition the effects of climate and crowding, as a metric of competition, on radial growth of three dominant conifer species along montane ecotones in the Rocky Mountains. These ecotones represent upper and lower distribution edges of two species, and span the distribution interior of the third species. Our results indicate a greater influence of climate (i.e., temperature and precipitation) than crowding on radial growth. Competition importance appears to increase towards regions of more favorable growing conditions, and precise responses to crowding and climate vary across species. Overall, our results suggest that climate will likely be the most important determinant of changes in tree growth at distribution edges of these montane conifers in the future

Complex regulation of the aflatoxin biosynthesis gene cluster of Aspergillus flavus in relation to various combinations of water activity and temperature

A microarray analysis was performed to study the effect of varying combinations of water activity and temperature on the activation of aflatoxin biosynthesis genes in Aspergillus flavus grown on YES medium. Generally A. flavus showed expression of the aflatoxin biosynthetic genes at all parameter combinations tested. Certain combinations of aw and temperature, especially combinations which imposed stress on the fungus resulted in a significant reduction of the growth rate. At these conditions induction of the whole aflatoxin biosynthesis gene cluster occurred, however the produced aflatoxin B1 was low. At all other combinations (25 °C/0.95 and 0.99; 30 °C/0.95 and 0.99; 35 °C/0.95 and 0.99) a reduced basal level of cluster gene expression occurred. At these combinations a high growth rate was obtained as well as high aflatoxin production. When single genes were compared, two groups with different expression profiles in relation to water activity/temperature combinations occurred. These two groups were co-ordinately localized within the aflatoxin gene cluster. The ratio of aflR/aflJ expression was correlated with increased aflatoxin biosynthesis

The Evolution of Multicomponent Systems at High Pressures: VI. The Thermodynamic Stability of the Hydrogen-Carbon System: The Genesis of Hydrocarbons and the Origin of Petroleum

The spontaneous genesis of hydrocarbons which comprise natural petroleum have been analyzed by chemical thermodynamic stability theory. The constraints imposed upon chemical evolution by the second law of thermodynamics are briefly reviewed; and the effective prohibition of transformation, in the regime of temperatures and pressures characteristic of the near-surface crust of the Earth, of biological molecules into hydrocarbon molecules heavier than methane is recognized. A general, first-principles equation of state has been developed by extending scaled particle theory (SPT) and by using the technique of the factored partition function of the Simplified Perturbed Hard Chain Theory (SPHCT). The chemical potentials, and the respective thermodynamic Affinity, have been calculated for typical components of the hydrogen-carbon (H-C) system over a range pressures between 1-100 kbar, and at temperatures consistent with those of the depths of the Earth at such pressures. The theoretical analyses establish that the normal alkanes, the homologous hydrocarbon group of lowest chemical potential, evolve only at pressures greater than approximately thirty kbar, excepting only the lightest, methane. The pressure of thirty kbar corresponds to depths of approximately 100 km. Special high-pressure apparatus has been designed which permits investigations at pressures to 50 kbar and temperatures to 2000 K, and which also allows rapid cooling while maintaining high pressures. The high-pressure genesis of petroleum hydrocarbons has been demonstrated using only the solid reagents iron oxide, FeO, and marble, CaCO3, 99.9% pure and wet with triple-distilled water

Incorporating climate change into pest risk models for forest pathogens : a role for cold stress in an era of global warming?

Climate change may alter the distribution and activity of native and alien pathogens that infect trees and, in severe cases, cause tree death. In this study, potential future changes in climate suitability are investigated for three forest pathogens that occur in western North America: the native Arceuthobium tsugense subsp tsugense, hemlock dwarf mistletoe, and two alien invasive species, Dothistroma septosporum, the cause of red band needle blight or Dothistroma needle blight, and Phytophthora ramorum, the cause of sudden oak death or ramorum blight. Specifically, the software CLIMEX is used to calculate Cold-Stress, Heat-Stress, and Dry-Stress indices for each pathogen in 98,224 grid cells in North America. Downscaled climate projections from the general circulation models CGCM1, CSIROMk2, and HadCM3 drive forecasts for 2020, 2050 and 2080. These climate projections are then analyzed to forecast shifts in the geographic extent of abiotic stresses that are severe enough to directly kill pathogen propagules and prevent year-round establishment of these pathogens. Cold stress currently has a major impact on climate suitability for all three pathogens; heat stress is likely to become more significant in the future. I forecast that the geographic extent of cold stress will decline from its current levels by a constant 5% (} 1%) of all grid cells in each 30-yr projection horizon for all three pathogens. Forecasts suggest the extent of heat stress will increase concurrently by 4% (+/- 1%) in each 30-yr projection horizon. Drought stress shows no consistent trend over time. No disproportionate effect of climate change on the two alien invasive pathogens over the native is forecasted. These results suggest that forecasts of future climate suitability for pathogens based on historical climate normals are accurate for less than 30 yrs. Adaptive management strategies in forestry will be needed to respond as these changes unfold

Stock assessment in brown shrimp (Crangon crangon) part 1: Investigation of possible methods

Het Ministerie van LNV, de gezamenlijke Producentenorganisaties voor de garnalenvisserij in Nederland, en de natuurorganisaties Stichting de Noordzee en de Waddenvereniging hebben het belang onderschreven van een gezamenlijk traject naar een verduurzaming van de garnalenvisserij en het verkrijgen van een MSC (Marine Stewardship Councel) certificering voor de garnalenvisserij. Om voor een MSC label in aanmerking te komen moet er aangetoond worden dat de gewone garnaal, Crangon crangon, niet overbevist wordt. Momenteel wordt de garnalen visserij niet beheerd en is er geen officiële bestandschatting. Wel worden er door de ICES crangon werkgroep (WGCRAN, ICES working Group on crangon fisheries and life history) op een beschrijvende manier de fluctuaties in dichtheden van de gewone garnaal bijgehouden. Het is echter wenselijk om tot een meer kwantitatieve bestandschatting te komen

Modeling pN2 through Geological Time: Implications for Planetary Climates and Atmospheric Biosignatures

Nitrogen is a major nutrient for all life on Earth and could plausibly play a similar role in extraterrestrial biospheres. The major reservoir of nitrogen at Earth's surface is atmospheric N2, but recent studies have proposed that the size of this reservoir may have fluctuated significantly over the course of Earth's history with particularly low levels in the Neoarchean - presumably as a result of biological activity. We used a biogeochemical box model to test which conditions are necessary to cause large swings in atmospheric N2 pressure. Parameters for our model are constrained by observations of modern Earth and reconstructions of biomass burial and oxidative weathering in deep time. A 1-D climate model was used to model potential effects on atmospheric climate. In a second set of tests, we perturbed our box model to investigate which parameters have the greatest impact on the evolution of atmospheric pN2 and consider possible implications for nitrogen cycling on other planets. Our results suggest that (a) a high rate of biomass burial would have been needed in the Archean to draw down atmospheric pN2 to less than half modern levels, (b) the resulting effect on temperature could probably have been compensated by increasing solar luminosity and a mild increase in pCO2, and (c) atmospheric oxygenation could have initiated a stepwise pN2 rebound through oxidative weathering. In general, life appears to be necessary for significant atmospheric pN2 swings on Earth-like planets. Our results further support the idea that an exoplanetary atmosphere rich in both N2 and O2 is a signature of an oxygen-producing biosphere.Comment: 33 pages, 11 figures, 2 tables (includes appendix), published in Astrobiolog