8,542 research outputs found
Graph Transformations and Game Theory: A Generative Mechanism for Network Formation
Many systems can be described in terms of networks with characteristic structural properties. To better understand the formation and the dynamics of complex networks one can develop generative models. We propose here a generative model (named dynamic spatial game) that combines graph transformations and game theory. The idea is that a complex network is obtained by a sequence of node-based transformations determined by the interactions of nodes present in the network. We model the node-based transformations by using graph grammars and the interactions between the nodes by using game theory. We illustrate dynamic spatial games on a couple of examples: the role of cooperation in tissue formation and tumor development and the emergence of patterns during the formation of ecological networks
Ten virtues of structured graphs
This paper extends the invited talk by the first author about the virtues
of structured graphs. The motivation behind the talk and this paper relies on our
experience on the development of ADR, a formal approach for the design of styleconformant,
reconfigurable software systems. ADR is based on hierarchical graphs
with interfaces and it has been conceived in the attempt of reconciling software architectures
and process calculi by means of graphical methods. We have tried to
write an ADR agnostic paper where we raise some drawbacks of flat, unstructured
graphs for the design and analysis of software systems and we argue that hierarchical,
structured graphs can alleviate such drawbacks
Context-Free Path Queries on RDF Graphs
Navigational graph queries are an important class of queries that canextract
implicit binary relations over the nodes of input graphs. Most of the
navigational query languages used in the RDF community, e.g. property paths in
W3C SPARQL 1.1 and nested regular expressions in nSPARQL, are based on the
regular expressions. It is known that regular expressions have limited
expressivity; for instance, some natural queries, like same generation-queries,
are not expressible with regular expressions. To overcome this limitation, in
this paper, we present cfSPARQL, an extension of SPARQL query language equipped
with context-free grammars. The cfSPARQL language is strictly more expressive
than property paths and nested expressions. The additional expressivity can be
used for modelling graph similarities, graph summarization and ontology
alignment. Despite the increasing expressivity, we show that cfSPARQL still
enjoys a low computational complexity and can be evaluated efficiently.Comment: 25 page
Context-Free Path Querying with Structural Representation of Result
Graph data model and graph databases are very popular in various areas such
as bioinformatics, semantic web, and social networks. One specific problem in
the area is a path querying with constraints formulated in terms of formal
grammars. The query in this approach is written as grammar, and paths querying
is graph parsing with respect to given grammar. There are several solutions to
it, but how to provide structural representation of query result which is
practical for answer processing and debugging is still an open problem. In this
paper we propose a graph parsing technique which allows one to build such
representation with respect to given grammar in polynomial time and space for
arbitrary context-free grammar and graph. Proposed algorithm is based on
generalized LL parsing algorithm, while previous solutions are based mostly on
CYK or Earley algorithms, which reduces time complexity in some cases.Comment: Evaluation extende
FLICK: developing and running application-specific network services
Data centre networks are increasingly programmable, with application-specific network services proliferating, from custom load-balancers to middleboxes providing caching and aggregation. Developers must currently implement these services using traditional low-level APIs, which neither support natural operations on application data nor provide efficient performance isolation. We describe FLICK, a framework for the programming and execution of application-specific network services on multi-core CPUs. Developers write network services in the FLICK language, which offers high-level processing constructs and application-relevant data types. FLICK programs are translated automatically to efficient, parallel task graphs, implemented in C++ on top of a user-space TCP stack. Task graphs have bounded resource usage at runtime, which means that the graphs of multiple services can execute concurrently without interference using cooperative scheduling. We evaluate FLICK with several services (an HTTP load-balancer, a Memcached router and a Hadoop data aggregator), showing that it achieves good performance while reducing development effort
Confluent Orthogonal Drawings of Syntax Diagrams
We provide a pipeline for generating syntax diagrams (also called railroad
diagrams) from context free grammars. Syntax diagrams are a graphical
representation of a context free language, which we formalize abstractly as a
set of mutually recursive nondeterministic finite automata and draw by
combining elements from the confluent drawing, layered drawing, and smooth
orthogonal drawing styles. Within our pipeline we introduce several heuristics
that modify the grammar but preserve the language, improving the aesthetics of
the final drawing.Comment: GD 201
Principal manifolds and graphs in practice: from molecular biology to dynamical systems
We present several applications of non-linear data modeling, using principal
manifolds and principal graphs constructed using the metaphor of elasticity
(elastic principal graph approach). These approaches are generalizations of the
Kohonen's self-organizing maps, a class of artificial neural networks. On
several examples we show advantages of using non-linear objects for data
approximation in comparison to the linear ones. We propose four numerical
criteria for comparing linear and non-linear mappings of datasets into the
spaces of lower dimension. The examples are taken from comparative political
science, from analysis of high-throughput data in molecular biology, from
analysis of dynamical systems.Comment: 12 pages, 9 figure
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