A Comparative Analysis of Ensemble Classifiers: Case Studies in Genomics

The combination of multiple classifiers using ensemble methods is increasingly important for making progress in a variety of difficult prediction problems. We present a comparative analysis of several ensemble methods through two case studies in genomics, namely the prediction of genetic interactions and protein functions, to demonstrate their efficacy on real-world datasets and draw useful conclusions about their behavior. These methods include simple aggregation, meta-learning, cluster-based meta-learning, and ensemble selection using heterogeneous classifiers trained on resampled data to improve the diversity of their predictions. We present a detailed analysis of these methods across 4 genomics datasets and find the best of these methods offer statistically significant improvements over the state of the art in their respective domains. In addition, we establish a novel connection between ensemble selection and meta-learning, demonstrating how both of these disparate methods establish a balance between ensemble diversity and performance.Comment: 10 pages, 3 figures, 8 tables, to appear in Proceedings of the 2013 International Conference on Data Minin

Impact of the learners diversity and combination method on the generation of heterogeneous classifier ensembles

Ensembles of classifiers is a proven approach in machine learning with a wide variety of research works. The main issue in ensembles of classifiers is not only the selection of the base classifiers, but also the combination of their outputs. According to the literature, it has been established that much is to be gained from combining classifiers if those classifiers are accurate and diverse. However, it is still an open issue how to define the relation between accuracy and diversity in order to define the best possible ensemble of classifiers. In this paper, we propose a novel approach to evaluate the impact of the diversity of the learners on the generation of heterogeneous ensembles. We present an exhaustive study of this approach using 27 different multiclass datasets and analysing their results in detail. In addition, to determine the performance of the different results, the presence of labelling noise is also considered.This work has been supported under projects PEAVAUTO-CM-UC3M–2020/00036/001, PID2019-104793RB-C31, and RTI2018-096036-B-C22, and by the Region of Madrid’s Excellence Program, Spain (EPUC3M17)