Simulation modelling and visualisation: toolkits for building artificial worlds

Simulations users at all levels make heavy use of compute resources to drive computational simulations for greatly varying applications areas of research using different simulation paradigms. Simulations are implemented in many software forms, ranging from highly standardised and general models that run in proprietary software packages to ad hoc hand-crafted simulations codes for very specific applications. Visualisation of the workings or results of a simulation is another highly valuable capability for simulation developers and practitioners. There are many different software libraries and methods available for creating a visualisation layer for simulations, and it is often a difficult and time-consuming process to assemble a toolkit of these libraries and other resources that best suits a particular simulation model. We present here a break-down of the main simulation paradigms, and discuss differing toolkits and approaches that different researchers have taken to tackle coupled simulation and visualisation in each paradigm

Imaging sediment structure: the emerging use of Magnetic Resonance Imaging (MRI) for 3D analysis of sediment structures and internal flow processes

Magnetic Resonance Imaging (MRI) can be used for 3D analysis of small-scale porous media structure and internal flow-related processes. It offers notable advantages over traditional sediment sampling (e.g. cores or surface-based scanning) as it is capable of high spatio-temporal resolution of the full 3D volume, including the sub-surface. Similarly, compared to X-Ray tomography, the extensive catalogue of MR pulse sequences typically provides: faster capture for imaging dynamic fluid processes; greater flexibility in resolving chemical species or tracers; and a safer radiation-free methodology. To demonstrate the relevance of this technique in geomorphological research, three exemplar applications are described: porous media structure of gravel bed rivers; measurements of fluid processes within aquifer pores and fractures; and, concentration mapping of contaminants through sand/gravel frameworks. Whilst, this emerging technique offers significant potential for visualizing many other ‘black-box’ processes important to the wider discipline, attention is afforded to discussion of the present constraints of the technique in field-based analysis

Four Decades of Computing in Subnuclear Physics - from Bubble Chamber to LHC

This manuscript addresses selected aspects of computing for the reconstruction and simulation of particle interactions in subnuclear physics. Based on personal experience with experiments at DESY and at CERN, I cover the evolution of computing hardware and software from the era of track chambers where interactions were recorded on photographic film up to the LHC experiments with their multi-million electronic channels

Flow velocity mapping using contrast enhanced high-frame-rate plane wave ultrasound and image tracking: methods and initial in vitro and in vivo evaluation

Ultrasound imaging is the most widely used method for visualising and quantifying blood flow in medical practice, but existing techniques have various limitations in terms of imaging sensitivity, field of view, flow angle dependence, and imaging depth. In this study, we developed an ultrasound imaging velocimetry approach capable of visualising and quantifying dynamic flow, by combining high-frame-rate plane wave ultrasound imaging, microbubble contrast agents, pulse inversion contrast imaging and speckle image tracking algorithms. The system was initially evaluated in vitro on both straight and carotid-mimicking vessels with steady and pulsatile flows and in vivo in the rabbit aorta. Colour and spectral Doppler measurements were also made. Initial flow mapping results were compared with theoretical prediction and reference Doppler measurements and indicate the potential of the new system as a highly sensitive, accurate, angle-independent and full field-of-view velocity mapping tool capable of tracking and quantifying fast and dynamic flows

Analysis of packaging effects on the performance of the microflown

The packaging effects of an acoustic particle velocity sensor have been analysed both analytically and by means of finite volume simulations on fluid dynamics. The results are compared with acoustic experiments that show a large magnification of the output signal of the sensor due to the mounting inside a cylindrically shaped package. The influences of the package consist of a decrease of the output signal at frequencies below 1 Hz, whereas signals with frequencies above 10 Hz are amplified by a constant factor of approximately 3.5 (11 dB). The analysis leads to an improved insight into the effects of viscosity and fluid flow that play a role in flow sensing and opens the way for further optimisation of sensitivity and bandwidth of the sensor

Background-oriented schlieren (BOS) for scramjet inlet-isolator investigation

Background-oriented Schlieren (BOS) technique is a recently invented non-intrusive flow diagnostic method which has yet to be fully explored in its capabilities. In this paper, BOS technique has been applied for investigating the general flow field characteristics inside a generic scramjet inlet-isolator with Mach 5 flow. The difficulty in finding the delicate balance between measurement sensitivity and measurement area image focusing has been demonstrated. The differences between direct cross-correlation (DCC) and Fast Fourier Transform (FFT) raw data processing algorithm have also been demonstrated. As an exploratory study of BOS capability, this paper found that BOS is simple yet robust enough to be used to visualize complex flow in a scramjet inlet in hypersonic flow. However, in this case its quantitative data can be strongly affected by 3-dimensionality thus obscuring the density value with significant errors

Steering in computational science: mesoscale modelling and simulation

This paper outlines the benefits of computational steering for high performance computing applications. Lattice-Boltzmann mesoscale fluid simulations of binary and ternary amphiphilic fluids in two and three dimensions are used to illustrate the substantial improvements which computational steering offers in terms of resource efficiency and time to discover new physics. We discuss details of our current steering implementations and describe their future outlook with the advent of computational grids.Comment: 40 pages, 11 figures. Accepted for publication in Contemporary Physic

Can LHCb Study Three Body Decays with Neutrals?

We present the first attempt to use a new method to measure CP violation in Dalitz plots. This method is unbinned, model independent and has a greater sensitivity to CP violating effects than binned methods. Preliminary studies have been made using the three-body decays $D^0 \rightarrow K_\mathrm{S}^0 h^+ h^-$ and $D^0 \rightarrow h^+ h^- \pi^0$, which are especially challenging since there is one neutral particle in each of the final states. An attempt to visualise where CP violation occurs in Dalitz plots is also presented.Comment: to appear in the proceedings of The 6th International Workshop on Charm Physics (CHARM 2013