11,579 research outputs found
Gating of memory encoding of time-delayed cross-frequency MEG networks revealed by graph filtration based on persistent homology
To explain gating of memory encoding, magnetoencephalography (MEG) was analyzed over multi-regional network of negative correlations between alpha band power during cue (cue-alpha) and gamma band power during item presentation (item-gamma) in Remember (R) and No-remember (NR) condition. Persistent homology with graph filtration on alpha-gamma correlation disclosed topological invariants to explain memory gating. Instruction compliance (R-hits minus NR-hits) was significantly related to negative coupling between the left superior occipital (cue-alpha) and the left dorsolateral superior frontal gyri (item-gamma) on permutation test, where the coupling was stronger in R than NR. In good memory performers (R-hits minus false alarm), the coupling was stronger in R than NR between the right posterior cingulate (cue-alpha) and the left fusiform gyri (item-gamma). Gating of memory encoding was dictated by inter-regional negative alpha-gamma coupling. Our graph filtration over MEG network revealed these inter-regional time-delayed cross-frequency connectivity serve gating of memory encoding
Understanding Hidden Memories of Recurrent Neural Networks
Recurrent neural networks (RNNs) have been successfully applied to various
natural language processing (NLP) tasks and achieved better results than
conventional methods. However, the lack of understanding of the mechanisms
behind their effectiveness limits further improvements on their architectures.
In this paper, we present a visual analytics method for understanding and
comparing RNN models for NLP tasks. We propose a technique to explain the
function of individual hidden state units based on their expected response to
input texts. We then co-cluster hidden state units and words based on the
expected response and visualize co-clustering results as memory chips and word
clouds to provide more structured knowledge on RNNs' hidden states. We also
propose a glyph-based sequence visualization based on aggregate information to
analyze the behavior of an RNN's hidden state at the sentence-level. The
usability and effectiveness of our method are demonstrated through case studies
and reviews from domain experts.Comment: Published at IEEE Conference on Visual Analytics Science and
Technology (IEEE VAST 2017
Node-attribute graph layout for small-world networks
Small-world networks are a very commonly occurring type of graph in the real-world, which exhibit a clustered structure that is not well represented by current graph layout algorithms. In many cases we also have information about the nodes in such graphs, which are typically depicted on the graph as node colour, shape or size. Here we demonstrate that these attributes can instead be used to layout the graph in high-dimensional data space. Then using a dimension reduction technique, targeted projection pursuit, the graph layout can be optimised for displaying clustering. The technique out-performs force-directed layout methods in cluster separation when applied to a sample, artificially generated, small-world network
StructMatrix: large-scale visualization of graphs by means of structure detection and dense matrices
Given a large-scale graph with millions of nodes and edges, how to reveal
macro patterns of interest, like cliques, bi-partite cores, stars, and chains?
Furthermore, how to visualize such patterns altogether getting insights from
the graph to support wise decision-making? Although there are many algorithmic
and visual techniques to analyze graphs, none of the existing approaches is
able to present the structural information of graphs at large-scale. Hence,
this paper describes StructMatrix, a methodology aimed at high-scalable visual
inspection of graph structures with the goal of revealing macro patterns of
interest. StructMatrix combines algorithmic structure detection and adjacency
matrix visualization to present cardinality, distribution, and relationship
features of the structures found in a given graph. We performed experiments in
real, large-scale graphs with up to one million nodes and millions of edges.
StructMatrix revealed that graphs of high relevance (e.g., Web, Wikipedia and
DBLP) have characterizations that reflect the nature of their corresponding
domains; our findings have not been seen in the literature so far. We expect
that our technique will bring deeper insights into large graph mining,
leveraging their use for decision making.Comment: To appear: 8 pages, paper to be published at the Fifth IEEE ICDM
Workshop on Data Mining in Networks, 2015 as Hugo Gualdron, Robson Cordeiro,
Jose Rodrigues (2015) StructMatrix: Large-scale visualization of graphs by
means of structure detection and dense matrices In: The Fifth IEEE ICDM
Workshop on Data Mining in Networks 1--8, IEE
Maximum Entropy Models of Shortest Path and Outbreak Distributions in Networks
Properties of networks are often characterized in terms of features such as
node degree distributions, average path lengths, diameters, or clustering
coefficients. Here, we study shortest path length distributions. On the one
hand, average as well as maximum distances can be determined therefrom; on the
other hand, they are closely related to the dynamics of network spreading
processes. Because of the combinatorial nature of networks, we apply maximum
entropy arguments to derive a general, physically plausible model. In
particular, we establish the generalized Gamma distribution as a continuous
characterization of shortest path length histograms of networks or arbitrary
topology. Experimental evaluations corroborate our theoretical results
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