A visual exploration workflow as enabler for the exploitation of Linked Open Data

Abstract. Semantically annotating and interlinking Open Data results in Linked Open Data which concisely and unambiguously describes a knowledge domain. However, the uptake of the Linked Data depends on its usefulness to non-Semantic Web experts. Failing to support data consumers to understand the added-value of Linked Data and possible exploitation opportunities could inhibit its diffusion. In this paper, we propose an interactive visual workflow for discovering and ex-ploring Linked Open Data. We implemented the workflow considering academic library metadata and carried out a qualitative evaluation. We assessed the work-flow’s potential impact on data consumers which bridges the offer: published Linked Open Data; and the demand as requests for: (i) higher quality data; and (ii) more applications that re-use data. More than 70 % of the 34 test users agreed that the workflow fulfills its goal: it facilitates non-Semantic Web experts to un-derstand the potential of Linked Open Data.

CancerLinker: Explorations of Cancer Study Network

Interactive visualization tools are highly desirable to biologist and cancer researchers to explore the complex structures, detect patterns and find out the relationships among bio-molecules responsible for a cancer type. A pathway contains various bio-molecules in different layers of the cell which is responsible for specific cancer type. Researchers are highly interested in understanding the relationships among the proteins of different pathways and furthermore want to know how those proteins are interacting in different pathways for various cancer types. Biologists find it useful to merge the data of different cancer studies in a single network and see the relationships among the different proteins which can help them detect the common proteins in cancer studies and hence reveal the pattern of interactions of those proteins. We introduce the CancerLinker, a visual analytic tool that helps researchers explore cancer study interaction network. Twenty-six cancer studies are merged to explore pathway data and bio-molecules relationships that can provide the answers to some significant questions which are helpful in cancer research. The CancerLinker also helps biologists explore the critical mutated proteins in multiple cancer studies. A bubble graph is constructed to visualize common protein based on its frequency and biological assemblies. Parallel coordinates highlight patterns of patient profiles (obtained from cBioportal by WebAPI services) on different attributes for a specified cancer studyComment: 7 pages, 9 figure

Design Fiction Diegetic Prototyping: A Research Framework for Visualizing Service Innovations

The file attached to this record is the author's final peer reviewed version. The Publisher's final version can be found by following the DOI link.Purpose: This paper presents a design fiction diegetic prototyping methodology and research framework for investigating service innovations that reflect future uses of new and emerging technologies. Design/methodology/approach: Drawing on speculative fiction, we propose a methodology that positions service innovations within a six-stage research development framework. We begin by reviewing and critiquing designerly approaches that have traditionally been associated with service innovations and futures literature. In presenting our framework, we provide an example of its application to the Internet of Things (IoT), illustrating the central tenets proposed and key issues identified. Findings: The research framework advances a methodology for visualizing future experiential service innovations, considering how realism may be integrated into a designerly approach. Research limitations/implications: Design fiction diegetic prototyping enables researchers to express a range of ‘what if’ or ‘what can it be’ research questions within service innovation contexts. However, the process encompasses degrees of subjectivity and relies on knowledge, judgment and projection. Practical implications: The paper presents an approach to devising future service scenarios incorporating new and emergent technologies in service contexts. The proposed framework may be used as part of a range of research designs, including qualitative, quantitative and mixed method investigations. Originality: Operationalizing an approach that generates and visualizes service futures from an experiential perspective contributes to the advancement of techniques that enables the exploration of new possibilities for service innovation research

Utilizing scale-free networks to support the search for scientific publications

When searching for scientific publications, users today often rely on search engines such as Yahoo.com. Whereas searching for publications whose titles are known is considered to be an easy task, users who are looking for important publications in research fields they are unfamiliar with face greater diffiulties since few or no indications of a publication’s importance to the respective fields are given. In this paper we investigate the application of the theory of scale-free networks to derive importance indicators for a collection of publications. A tool was developed to support the user in his publication search by visualizing the publications’ importance indicators derived from the number of citations received and the publication’s age as well as visualizing part of the citation network structure. A preliminary user study indicates the utility of our approach and warrants further research in that direction

Understanding Hidden Memories of Recurrent Neural Networks

Recurrent neural networks (RNNs) have been successfully applied to various natural language processing (NLP) tasks and achieved better results than conventional methods. However, the lack of understanding of the mechanisms behind their effectiveness limits further improvements on their architectures. In this paper, we present a visual analytics method for understanding and comparing RNN models for NLP tasks. We propose a technique to explain the function of individual hidden state units based on their expected response to input texts. We then co-cluster hidden state units and words based on the expected response and visualize co-clustering results as memory chips and word clouds to provide more structured knowledge on RNNs' hidden states. We also propose a glyph-based sequence visualization based on aggregate information to analyze the behavior of an RNN's hidden state at the sentence-level. The usability and effectiveness of our method are demonstrated through case studies and reviews from domain experts.Comment: Published at IEEE Conference on Visual Analytics Science and Technology (IEEE VAST 2017

Contextualization of topics - browsing through terms, authors, journals and cluster allocations

This paper builds on an innovative Information Retrieval tool, Ariadne. The tool has been developed as an interactive network visualization and browsing tool for large-scale bibliographic databases. It basically allows to gain insights into a topic by contextualizing a search query (Koopman et al., 2015). In this paper, we apply the Ariadne tool to a far smaller dataset of 111,616 documents in astronomy and astrophysics. Labeled as the Berlin dataset, this data have been used by several research teams to apply and later compare different clustering algorithms. The quest for this team effort is how to delineate topics. This paper contributes to this challenge in two different ways. First, we produce one of the different cluster solution and second, we use Ariadne (the method behind it, and the interface - called LittleAriadne) to display cluster solutions of the different group members. By providing a tool that allows the visual inspection of the similarity of article clusters produced by different algorithms, we present a complementary approach to other possible means of comparison. More particular, we discuss how we can - with LittleAriadne - browse through the network of topical terms, authors, journals and cluster solutions in the Berlin dataset and compare cluster solutions as well as see their context.Comment: proceedings of the ISSI 2015 conference (accepted