A Relation Extraction Approach for Clinical Decision Support

In this paper, we investigate how semantic relations between concepts extracted from medical documents can be employed to improve the retrieval of medical literature. Semantic relations explicitly represent relatedness between concepts and carry high informative power that can be leveraged to improve the effectiveness of retrieval functionalities of clinical decision support systems. We present preliminary results and show how relations are able to provide a sizable increase of the precision for several topics, albeit having no impact on others. We then discuss some future directions to minimize the impact of negative results while maximizing the impact of good results.Comment: 4 pages, 1 figure, DTMBio-KMH 2018, in conjunction with ACM 27th Conference on Information and Knowledge Management (CIKM), October 22-26 2018, Lingotto, Turin, Ital

Entity Query Feature Expansion Using Knowledge Base Links

Recent advances in automatic entity linking and knowledge base construction have resulted in entity annotations for document and query collections. For example, annotations of entities from large general purpose knowledge bases, such as Freebase and the Google Knowledge Graph. Understanding how to leverage these entity annotations of text to improve ad hoc document retrieval is an open research area. Query expansion is a commonly used technique to improve retrieval effectiveness. Most previous query expansion approaches focus on text, mainly using unigram concepts. In this paper, we propose a new technique, called entity query feature expansion (EQFE) which enriches the query with features from entities and their links to knowledge bases, including structured attributes and text. We experiment using both explicit query entity annotations and latent entities. We evaluate our technique on TREC text collections automatically annotated with knowledge base entity links, including the Google Freebase Annotations (FACC1) data. We find that entity-based feature expansion results in significant improvements in retrieval effectiveness over state-of-the-art text expansion approaches

Use of Wikipedia Categories in Entity Ranking

Wikipedia is a useful source of knowledge that has many applications in language processing and knowledge representation. The Wikipedia category graph can be compared with the class hierarchy in an ontology; it has some characteristics in common as well as some differences. In this paper, we present our approach for answering entity ranking queries from the Wikipedia. In particular, we explore how to make use of Wikipedia categories to improve entity ranking effectiveness. Our experiments show that using categories of example entities works significantly better than using loosely defined target categories

An affect-based video retrieval system with open vocabulary querying

Content-based video retrieval systems (CBVR) are creating new search and browse capabilities using metadata describing significant features of the data. An often overlooked aspect of human interpretation of multimedia data is the affective dimension. Incorporating affective information into multimedia metadata can potentially enable search using this alternative interpretation of multimedia content. Recent work has described methods to automatically assign affective labels to multimedia data using various approaches. However, the subjective and imprecise nature of affective labels makes it difficult to bridge the semantic gap between system-detected labels and user expression of information requirements in multimedia retrieval. We present a novel affect-based video retrieval system incorporating an open-vocabulary query stage based on WordNet enabling search using an unrestricted query vocabulary. The system performs automatic annotation of video data with labels of well defined affective terms. In retrieval annotated documents are ranked using the standard Okapi retrieval model based on open-vocabulary text queries. We present experimental results examining the behaviour of the system for retrieval of a collection of automatically annotated feature films of different genres. Our results indicate that affective annotation can potentially provide useful augmentation to more traditional objective content description in multimedia retrieval

Concept-based Interactive Query Expansion Support Tool (CIQUEST)

This report describes a three-year project (2000-03) undertaken in the Information Studies Department at The University of Sheffield and funded by Resource, The Council for Museums, Archives and Libraries. The overall aim of the research was to provide user support for query formulation and reformulation in searching large-scale textual resources including those of the World Wide Web. More specifically the objectives were: to investigate and evaluate methods for the automatic generation and organisation of concepts derived from retrieved document sets, based on statistical methods for term weighting; and to conduct user-based evaluations on the understanding, presentation and retrieval effectiveness of concept structures in selecting candidate terms for interactive query expansion. The TREC test collection formed the basis for the seven evaluative experiments conducted in the course of the project. These formed four distinct phases in the project plan. In the first phase, a series of experiments was conducted to investigate further techniques for concept derivation and hierarchical organisation and structure. The second phase was concerned with user-based validation of the concept structures. Results of phases 1 and 2 informed on the design of the test system and the user interface was developed in phase 3. The final phase entailed a user-based summative evaluation of the CiQuest system. The main findings demonstrate that concept hierarchies can effectively be generated from sets of retrieved documents and displayed to searchers in a meaningful way. The approach provides the searcher with an overview of the contents of the retrieved documents, which in turn facilitates the viewing of documents and selection of the most relevant ones. Concept hierarchies are a good source of terms for query expansion and can improve precision. The extraction of descriptive phrases as an alternative source of terms was also effective. With respect to presentation, cascading menus were easy to browse for selecting terms and for viewing documents. In conclusion the project dissemination programme and future work are outlined