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Information Security as Strategic (In)effectivity
Security of information flow is commonly understood as preventing any
information leakage, regardless of how grave or harmless consequences the
leakage can have. In this work, we suggest that information security is not a
goal in itself, but rather a means of preventing potential attackers from
compromising the correct behavior of the system. To formalize this, we first
show how two information flows can be compared by looking at the adversary's
ability to harm the system. Then, we propose that the information flow in a
system is effectively information-secure if it does not allow for more harm
than its idealized variant based on the classical notion of noninterference
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The archaeal ATPase PINA interacts with the helicase Hjm via its carboxyl terminal KH domain remodeling and processing replication fork and Holliday junction.
PINA is a novel ATPase and DNA helicase highly conserved in Archaea, the third domain of life. The PINA from Sulfolobus islandicus (SisPINA) forms a hexameric ring in crystal and solution. The protein is able to promote Holliday junction (HJ) migration and physically and functionally interacts with Hjc, the HJ specific endonuclease. Here, we show that SisPINA has direct physical interaction with Hjm (Hel308a), a helicase presumably targeting replication forks. In vitro biochemical analysis revealed that Hjm, Hjc, and SisPINA are able to coordinate HJ migration and cleavage in a concerted way. Deletion of the carboxyl 13 amino acid residues impaired the interaction between SisPINA and Hjm. Crystal structure analysis showed that the carboxyl 70 amino acid residues fold into a type II KH domain which, in other proteins, functions in binding RNA or ssDNA. The KH domain not only mediates the interactions of PINA with Hjm and Hjc but also regulates the hexameric assembly of PINA. Our results collectively suggest that SisPINA, Hjm and Hjc work together to function in replication fork regression, HJ formation and HJ cleavage
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