Mining Brain Networks using Multiple Side Views for Neurological Disorder Identification

Mining discriminative subgraph patterns from graph data has attracted great interest in recent years. It has a wide variety of applications in disease diagnosis, neuroimaging, etc. Most research on subgraph mining focuses on the graph representation alone. However, in many real-world applications, the side information is available along with the graph data. For example, for neurological disorder identification, in addition to the brain networks derived from neuroimaging data, hundreds of clinical, immunologic, serologic and cognitive measures may also be documented for each subject. These measures compose multiple side views encoding a tremendous amount of supplemental information for diagnostic purposes, yet are often ignored. In this paper, we study the problem of discriminative subgraph selection using multiple side views and propose a novel solution to find an optimal set of subgraph features for graph classification by exploring a plurality of side views. We derive a feature evaluation criterion, named gSide, to estimate the usefulness of subgraph patterns based upon side views. Then we develop a branch-and-bound algorithm, called gMSV, to efficiently search for optimal subgraph features by integrating the subgraph mining process and the procedure of discriminative feature selection. Empirical studies on graph classification tasks for neurological disorders using brain networks demonstrate that subgraph patterns selected by the multi-side-view guided subgraph selection approach can effectively boost graph classification performances and are relevant to disease diagnosis.Comment: in Proceedings of IEEE International Conference on Data Mining (ICDM) 201

Online Unsupervised Multi-view Feature Selection

In the era of big data, it is becoming common to have data with multiple modalities or coming from multiple sources, known as "multi-view data". Multi-view data are usually unlabeled and come from high-dimensional spaces (such as language vocabularies), unsupervised multi-view feature selection is crucial to many applications. However, it is nontrivial due to the following challenges. First, there are too many instances or the feature dimensionality is too large. Thus, the data may not fit in memory. How to select useful features with limited memory space? Second, how to select features from streaming data and handles the concept drift? Third, how to leverage the consistent and complementary information from different views to improve the feature selection in the situation when the data are too big or come in as streams? To the best of our knowledge, none of the previous works can solve all the challenges simultaneously. In this paper, we propose an Online unsupervised Multi-View Feature Selection, OMVFS, which deals with large-scale/streaming multi-view data in an online fashion. OMVFS embeds unsupervised feature selection into a clustering algorithm via NMF with sparse learning. It further incorporates the graph regularization to preserve the local structure information and help select discriminative features. Instead of storing all the historical data, OMVFS processes the multi-view data chunk by chunk and aggregates all the necessary information into several small matrices. By using the buffering technique, the proposed OMVFS can reduce the computational and storage cost while taking advantage of the structure information. Furthermore, OMVFS can capture the concept drifts in the data streams. Extensive experiments on four real-world datasets show the effectiveness and efficiency of the proposed OMVFS method. More importantly, OMVFS is about 100 times faster than the off-line methods

Broad Learning for Healthcare

A broad spectrum of data from different modalities are generated in the healthcare domain every day, including scalar data (e.g., clinical measures collected at hospitals), tensor data (e.g., neuroimages analyzed by research institutes), graph data (e.g., brain connectivity networks), and sequence data (e.g., digital footprints recorded on smart sensors). Capability for modeling information from these heterogeneous data sources is potentially transformative for investigating disease mechanisms and for informing therapeutic interventions. Our works in this thesis attempt to facilitate healthcare applications in the setting of broad learning which focuses on fusing heterogeneous data sources for a variety of synergistic knowledge discovery and machine learning tasks. We are generally interested in computer-aided diagnosis, precision medicine, and mobile health by creating accurate user profiles which include important biomarkers, brain connectivity patterns, and latent representations. In particular, our works involve four different data mining problems with application to the healthcare domain: multi-view feature selection, subgraph pattern mining, brain network embedding, and multi-view sequence prediction.Comment: PhD Thesis, University of Illinois at Chicago, March 201