Penalized Orthogonal-Components Regression for Large p Small n Data

We propose a penalized orthogonal-components regression (POCRE) for large p small n data. Orthogonal components are sequentially constructed to maximize, upon standardization, their correlation to the response residuals. A new penalization framework, implemented via empirical Bayes thresholding, is presented to effectively identify sparse predictors of each component. POCRE is computationally efficient owing to its sequential construction of leading sparse principal components. In addition, such construction offers other properties such as grouping highly correlated predictors and allowing for collinear or nearly collinear predictors. With multivariate responses, POCRE can construct common components and thus build up latent-variable models for large p small n data.Comment: 12 page

Sparse Vector Autoregressive Modeling

The vector autoregressive (VAR) model has been widely used for modeling temporal dependence in a multivariate time series. For large (and even moderate) dimensions, the number of AR coefficients can be prohibitively large, resulting in noisy estimates, unstable predictions and difficult-to-interpret temporal dependence. To overcome such drawbacks, we propose a 2-stage approach for fitting sparse VAR (sVAR) models in which many of the AR coefficients are zero. The first stage selects non-zero AR coefficients based on an estimate of the partial spectral coherence (PSC) together with the use of BIC. The PSC is useful for quantifying the conditional relationship between marginal series in a multivariate process. A refinement second stage is then applied to further reduce the number of parameters. The performance of this 2-stage approach is illustrated with simulation results. The 2-stage approach is also applied to two real data examples: the first is the Google Flu Trends data and the second is a time series of concentration levels of air pollutants.Comment: 39 pages, 7 figure

Penalized Orthogonal-Components Regression for Large p Small n Data

We propose a penalized orthogonal-components regression (POCRE) for large p small n data. Orthogonal components are sequentially constructed to maximize, upon standardization, their correlation to the response residuals. A new penalization framework, implemented via empirical Bayes thresholding, is presented to effectively identify sparse predictors of each component. POCRE is computationally efficient owing to its sequential construction of leading sparse principal components. In addition, such construction offers other properties such as grouping highly correlated predictors and allowing for collinear or nearly collinear predictors. With multivariate responses, POCRE can construct common components and thus build up latent-variable models for large p small n data.Comment: 12 page

A General Framework for Fast Stagewise Algorithms

Forward stagewise regression follows a very simple strategy for constructing a sequence of sparse regression estimates: it starts with all coefficients equal to zero, and iteratively updates the coefficient (by a small amount $\epsilon$) of the variable that achieves the maximal absolute inner product with the current residual. This procedure has an interesting connection to the lasso: under some conditions, it is known that the sequence of forward stagewise estimates exactly coincides with the lasso path, as the step size $\epsilon$ goes to zero. Furthermore, essentially the same equivalence holds outside of least squares regression, with the minimization of a differentiable convex loss function subject to an $\ell_1$ norm constraint (the stagewise algorithm now updates the coefficient corresponding to the maximal absolute component of the gradient). Even when they do not match their $\ell_1$-constrained analogues, stagewise estimates provide a useful approximation, and are computationally appealing. Their success in sparse modeling motivates the question: can a simple, effective strategy like forward stagewise be applied more broadly in other regularization settings, beyond the $\ell_1$ norm and sparsity? The current paper is an attempt to do just this. We present a general framework for stagewise estimation, which yields fast algorithms for problems such as group-structured learning, matrix completion, image denoising, and more.Comment: 56 pages, 15 figure

Sparse canonical correlation analysis from a predictive point of view

Canonical correlation analysis (CCA) describes the associations between two sets of variables by maximizing the correlation between linear combinations of the variables in each data set. However, in high-dimensional settings where the number of variables exceeds the sample size or when the variables are highly correlated, traditional CCA is no longer appropriate. This paper proposes a method for sparse CCA. Sparse estimation produces linear combinations of only a subset of variables from each data set, thereby increasing the interpretability of the canonical variates. We consider the CCA problem from a predictive point of view and recast it into a regression framework. By combining an alternating regression approach together with a lasso penalty, we induce sparsity in the canonical vectors. We compare the performance with other sparse CCA techniques in different simulation settings and illustrate its usefulness on a genomic data set