The Complete Flux Scheme : error analysis and application to plasma simulation

The Complete Flux scheme (CFS) (J.H.M. ten Thije Boonkkamp et al., J. Sci. Comput. 46 (2011) 47–70) is an extension of the widely used exponential di¿erence scheme for advection-di¿usion-reaction equations. In the present paper we provide a rigorous proof that the convergence order of this scheme is 2 for all grid Péclet numbers, whereas that of the exponential scheme reduces to 1 for high grid Péclet numbers in the presence of source terms. The performance of both schemes is compared in two case studies: a model system and a real-world model of a parallel-plate glow discharge. The results indicate that the usage of CFS allows a considerable reduction of the number of grid points that is required to obtain the same accuracy. The MATLAB/Octave source code that has been used in these studies has been made available

Trinity: A Unified Treatment of Turbulence, Transport, and Heating in Magnetized Plasmas

To faithfully simulate ITER and other modern fusion devices, one must resolve electron and ion fluctuation scales in a five-dimensional phase space and time. Simultaneously, one must account for the interaction of this turbulence with the slow evolution of the large-scale plasma profiles. Because of the enormous range of scales involved and the high dimensionality of the problem, resolved first-principles global simulations are very challenging using conventional (brute force) techniques. In this thesis, the problem of resolving turbulence is addressed by developing velocity space resolution diagnostics and an adaptive collisionality that allow for the confident simulation of velocity space dynamics using the approximate minimal necessary dissipation. With regard to the wide range of scales, a new approach has been developed in which turbulence calculations from multiple gyrokinetic flux tube simulations are coupled together using transport equations to obtain self-consistent, steady-state background profiles and corresponding turbulent fluxes and heating. This approach is embodied in a new code, Trinity, which is capable of evolving equilibrium profiles for multiple species, including electromagnetic effects and realistic magnetic geometry, at a fraction of the cost of conventional global simulations. Furthermore, an advanced model physical collision operator for gyrokinetics has been derived and implemented, allowing for the study of collisional turbulent heating, which has not been extensively studied. To demonstrate the utility of the coupled flux tube approach, preliminary results from Trinity simulations of the core of an ITER plasma are presented.Comment: 187 pages, 53 figures, Ph.D. thesis in physics at University of Maryland, single-space versio

A Discontinuous Galerkin Method for Ideal Two-Fluid Plasma Equations

A discontinuous Galerkin method for the ideal 5 moment two-fluid plasma system is presented. The method uses a second or third order discontinuous Galerkin spatial discretization and a third order TVD Runge-Kutta time stepping scheme. The method is benchmarked against an analytic solution of a dispersive electron acoustic square pulse as well as the two-fluid electromagnetic shock and existing numerical solutions to the GEM challenge magnetic reconnection problem. The algorithm can be generalized to arbitrary geometries and three dimensions. An approach to maintaining small gauge errors based on error propagation is suggested.Comment: 40 pages, 18 figures

Thermal Diagnostics with the Atmospheric Imaging Assembly onboard the Solar Dynamics Observatory: A Validated Method for Differential Emission Measure Inversions

We present a new method for performing differential emission measure (DEM) inversions on narrow-band EUV images from the Atmospheric Imaging Assembly (AIA) onboard the Solar Dynamics Observatory (SDO). The method yields positive definite DEM solutions by solving a linear program. This method has been validated against a diverse set of thermal models of varying complexity and realism. These include (1) idealized gaussian DEM distributions, (2) 3D models of NOAA Active Region 11158 comprising quasi-steady loop atmospheres in a non-linear force-free field, and (3) thermodynamic models from a fully-compressible, 3D MHD simulation of AR corona formation following magnetic flux emergence. We then present results from the application of the method to AIA observations of Active Region 11158, comparing the region's thermal structure on two successive solar rotations. Additionally, we show how the DEM inversion method can be adapted to simultaneously invert AIA and XRT data, and how supplementing AIA data with the latter improves the inversion result. The speed of the method allows for routine production of DEM maps, thus facilitating science studies that require tracking of the thermal structure of the solar corona in time and space.Comment: 21 pages, 18 figures, accepted for publication in Ap

Generalized, energy-conserving numerical simulations of particles in general relativity. II. Test particles in electromagnetic fields and GRMHD

Direct observations of compact objects, in the form of radiation spectra, gravitational waves from VIRGO/LIGO, and forthcoming direct imaging, are currently one of the primary source of information on the physics of plasmas in extreme astrophysical environments. The modeling of such physical phenomena requires numerical methods that allow for the simulation of microscopic plasma dynamics in presence of both strong gravity and electromagnetic fields. In Bacchini et al. (2018) we presented a detailed study on numerical techniques for the integration of free geodesic motion. Here we extend the study by introducing electromagnetic forces in the simulation of charged particles in curved spacetimes. We extend the Hamiltonian energy-conserving method presented in Bacchini et al. (2018) to include the Lorentz force and we test its performance compared to that of standard explicit Runge-Kutta and implicit midpoint rule schemes against analytic solutions. Then, we show the application of the numerical schemes to the integration of test particle trajectories in general relativistic magnetohydrodynamic (GRMHD) simulations, by modifying the algorithms to handle grid-based electromagnetic fields. We test this approach by simulating ensembles of charged particles in a static GRMHD configuration obtained with the Black Hole Accretion Code (BHAC)