34,270 research outputs found
AMP: A Science-driven Web-based Application for the TeraGrid
The Asteroseismic Modeling Portal (AMP) provides a web-based interface for
astronomers to run and view simulations that derive the properties of Sun-like
stars from observations of their pulsation frequencies. In this paper, we
describe the architecture and implementation of AMP, highlighting the
lightweight design principles and tools used to produce a functional
fully-custom web-based science application in less than a year. Targeted as a
TeraGrid science gateway, AMP's architecture and implementation are intended to
simplify its orchestration of TeraGrid computational resources. AMP's web-based
interface was developed as a traditional standalone database-backed web
application using the Python-based Django web development framework, allowing
us to leverage the Django framework's capabilities while cleanly separating the
user interface development from the grid interface development. We have found
this combination of tools flexible and effective for rapid gateway development
and deployment.Comment: 7 pages, 2 figures, in Proceedings of the 5th Grid Computing
Environments Worksho
The eNMR platform for structural biology
The e-NMR project is a European cooperation initiative that aims at providing the bio-NMR user community with a software platform integrating and streamlining the computational approaches necessary for the analysis of bio-NMR data. The e-NMR platform is based on a Grid computational infrastructure. A main focus of the current implementation of the e-NMR platform is on streamlining structure determination protocols. Indeed, to facilitate the use of NMR spectroscopy in the life sciences, the eNMR consortium has set out to provide protocolized services through easy-to-use web interfaces, while still retaining sufficient flexibility to handle specific requests by expert users. Various programs relevant for structural biology applications are already available through the e-NMR portal, including HADDOCK, XPLOR-NIH, CYANA and csRosetta. The implementation of these services, and in particular the distribution of calculations to the GRID infrastructure, has required the development of specific tools. However, the GRID infrastructure is maintained completely transparent to the users. With more than 150 registered users, eNMR is currently the second largest European Virtual Organization in the life sciences
A framework for network RTK data processing based on grid computing
Real-Time Kinematic (RTK) positioning is a technique used to provide precise positioning services at centimetre accuracy level in the context of Global Navigation Satellite Systems (GNSS). While a Network-based RTK (N-RTK) system involves multiple continuously operating reference stations (CORS), the simplest form of a NRTK system is a single-base RTK. In Australia there are several NRTK services operating in different states and over 1000 single-base RTK systems to support precise positioning applications for surveying, mining, agriculture, and civil construction in regional areas. Additionally, future generation GNSS constellations, including modernised GPS, Galileo, GLONASS, and Compass, with multiple frequencies have been either developed or will become fully operational in the next decade.
A trend of future development of RTK systems is to make use of various isolated operating network and single-base RTK systems and multiple GNSS constellations for extended service coverage and improved performance. Several computational challenges have been identified for future NRTK services including:
• Multiple GNSS constellations and multiple frequencies
• Large scale, wide area NRTK services with a network of networks
• Complex computation algorithms and processes
• Greater part of positioning processes shifting from user end to network centre with the ability to cope with hundreds of simultaneous users’ requests (reverse RTK)
There are two major requirements for NRTK data processing based on the four challenges faced by future NRTK systems, expandable computing power and scalable data sharing/transferring capability. This research explores new approaches to address these future NRTK challenges and requirements using the Grid Computing facility, in particular for large data processing burdens and complex computation algorithms. A Grid Computing based NRTK framework is proposed in this research, which is a layered framework consisting of: 1) Client layer with the form of Grid portal; 2) Service layer; 3) Execution layer. The user’s request is passed through these layers, and scheduled to different Grid nodes in the network infrastructure.
A proof-of-concept demonstration for the proposed framework is performed in a five-node Grid environment at QUT and also Grid Australia. The Networked Transport of RTCM via Internet Protocol (Ntrip) open source software is adopted to download real-time RTCM data from multiple reference stations through the Internet, followed by job scheduling and simplified RTK computing. The system performance has been analysed and the results have preliminarily demonstrated the concepts and functionality of the new NRTK framework based on Grid Computing, whilst some aspects of the performance of the system are yet to be improved in future work
Development of Grid e-Infrastructure in South-Eastern Europe
Over the period of 6 years and three phases, the SEE-GRID programme has
established a strong regional human network in the area of distributed
scientific computing and has set up a powerful regional Grid infrastructure. It
attracted a number of user communities and applications from diverse fields
from countries throughout the South-Eastern Europe. From the infrastructure
point view, the first project phase has established a pilot Grid infrastructure
with more than 20 resource centers in 11 countries. During the subsequent two
phases of the project, the infrastructure has grown to currently 55 resource
centers with more than 6600 CPUs and 750 TBs of disk storage, distributed in 16
participating countries. Inclusion of new resource centers to the existing
infrastructure, as well as a support to new user communities, has demanded
setup of regionally distributed core services, development of new monitoring
and operational tools, and close collaboration of all partner institution in
managing such a complex infrastructure. In this paper we give an overview of
the development and current status of SEE-GRID regional infrastructure and
describe its transition to the NGI-based Grid model in EGI, with the strong SEE
regional collaboration.Comment: 22 pages, 12 figures, 4 table
Jeeva: Enterprise Grid-enabled Web Portal for Protein Secondary Structure Prediction
This paper presents a Grid portal for protein secondary structure prediction
developed by using services of Aneka, a .NET-based enterprise Grid technology.
The portal is used by research scientists to discover new prediction structures
in a parallel manner. An SVM (Support Vector Machine)-based prediction
algorithm is used with 64 sample protein sequences as a case study to
demonstrate the potential of enterprise Grids.Comment: 7 page
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Business Grid Services
Grid services have come to represent the synthesis of web services and grid computing paradigms. Web services provide the means to modularize software, enabling loosely coupled and novel synthesis. Grid computing removes the binding between functional software components and specific hosting hardware, enabling software to be deployed dynamically over a network (e.g. intra-, extra- or inter-net). Applying the constructs of grid computing to the service orientation of enterprise software will allow business service networks to utilize more specialized services. An upper service ontology that enables business grid services to be described and then related to the grid hosting platform is presented. Explicit knowledge is required for enterprise software, hosting servers and the domain that can then be utilized by both SLA and reservation systems. The ontology presented is derived from and validated using a collection of web services taken from leading investment banks
GridCertLib: a Single Sign-on Solution for Grid Web Applications and Portals
This paper describes the design and implementation of GridCertLib, a Java
library leveraging a Shibboleth-based authentication infrastructure and the
SLCS online certificate signing service, to provide short-lived X.509
certificates and Grid proxies. The main use case envisioned for GridCertLib, is
to provide seamless and secure access to Grid/X.509 certificates and proxies in
web applications and portals: when a user logs in to the portal using
Shibboleth authentication, GridCertLib can automatically obtain a Grid/X.509
certificate from the SLCS service and generate a VOMS proxy from it. We give an
overview of the architecture of GridCertLib and briefly describe its
programming model. Its application to some deployment scenarios is outlined, as
well as a report on practical experience integrating GridCertLib into portals
for Bioinformatics and Computational Chemistry applications, based on the
popular P-GRADE and Django softwares.Comment: 18 pages, 1 figure; final manuscript accepted for publication by the
"Journal of Grid Computing
Astrocomp: a web service for the use of high performance computers in Astrophysics
Astrocomp is a joint project, developed by the INAF-Astrophysical Observatory
of Catania, University of Roma La Sapienza and Enea. The project has the goal
of providing the scientific community of a web-based user-friendly interface
which allows running parallel codes on a set of high-performance computing
(HPC) resources, without any need for specific knowledge about parallel
programming and Operating Systems commands. Astrocomp provides, also, computing
time on a set of parallel computing systems, available to the authorized user.
At present, the portal makes a few codes available, among which: FLY, a
cosmological code for studying three-dimensional collisionless self-gravitating
systems with periodic boundary conditions; ATD, a parallel tree-code for the
simulation of the dynamics of boundary-free collisional and collisionless
self-gravitating systems and MARA, a code for stellar light curves analysis.
Other codes are going to be added to the portal.Comment: LaTeX with elsart.cls and harvard.sty (included). 7 pages. To be
submitted to a specific journa
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