34 research outputs found

    Processing hidden Markov models using recurrent neural networks for biological applications

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    Philosophiae Doctor - PhDIn this thesis, we present a novel hybrid architecture by combining the most popular sequence recognition models such as Recurrent Neural Networks (RNNs) and Hidden Markov Models (HMMs). Though sequence recognition problems could be potentially modelled through well trained HMMs, they could not provide a reasonable solution to the complicated recognition problems. In contrast, the ability of RNNs to recognize the complex sequence recognition problems is known to be exceptionally good. It should be noted that in the past, methods for applying HMMs into RNNs have been developed by other researchers. However, to the best of our knowledge, no algorithm for processing HMMs through learning has been given. Taking advantage of the structural similarities of the architectural dynamics of the RNNs and HMMs, in this work we analyze the combination of these two systems into the hybrid architecture. To this end, the main objective of this study is to improve the sequence recognition/classi_cation performance by applying a hybrid neural/symbolic approach. In particular, trained HMMs are used as the initial symbolic domain theory and directly encoded into appropriate RNN architecture, meaning that the prior knowledge is processed through the training of RNNs. Proposed algorithm is then implemented on sample test beds and other real time biological applications

    Syntax with oscillators and energy levels

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    This book presents a new approach to studying the syntax of human language, one which emphasizes how we think about time. Tilsen argues that many current theories are unsatisfactory because those theories conceptualize syntactic patterns with spatially arranged structures of objects. These object-structures are atemporal and do not lend well to reasoning about time. The book develops an alternative conceptual model in which oscillatory systems of various types interact with each other through coupling forces, and in which the relative energies of those systems are organized in particular ways. Tilsen emphasizes that the two primary mechanisms of the approach β€“ oscillators and energy levels β€“ require alternative ways of thinking about time. Furthermore, his theory leads to a new way of thinking about grammaticality and the recursive nature of language. The theory is applied to a variety of syntactic phenomena: word order, phrase structure, morphosyntax, constituency, case systems, ellipsis, anaphora, and islands. The book also presents a general program for the study of language in which the construction of linguistic theories is itself an object of theoretical analysis. Reviewed by John Goldsmith, Mark Gibson and an anonymous reviewer. Signed reports are openly available in the downloads session

    Syntax with oscillators and energy levels

    Get PDF
    This book presents a new approach to studying the syntax of human language, one which emphasizes how we think about time. Tilsen argues that many current theories are unsatisfactory because those theories conceptualize syntactic patterns with spatially arranged structures of objects. These object-structures are atemporal and do not lend well to reasoning about time. The book develops an alternative conceptual model in which oscillatory systems of various types interact with each other through coupling forces, and in which the relative energies of those systems are organized in particular ways. Tilsen emphasizes that the two primary mechanisms of the approach β€“ oscillators and energy levels β€“ require alternative ways of thinking about time. Furthermore, his theory leads to a new way of thinking about grammaticality and the recursive nature of language. The theory is applied to a variety of syntactic phenomena: word order, phrase structure, morphosyntax, constituency, case systems, ellipsis, anaphora, and islands. The book also presents a general program for the study of language in which the construction of linguistic theories is itself an object of theoretical analysis. Reviewed by John Goldsmith, Mark Gibson and an anonymous reviewer. Signed reports are openly available in the downloads session

    Syntax with oscillators and energy levels

    Get PDF
    This book presents a new approach to studying the syntax of human language, one which emphasizes how we think about time. Tilsen argues that many current theories are unsatisfactory because those theories conceptualize syntactic patterns with spatially arranged structures of objects. These object-structures are atemporal and do not lend well to reasoning about time. The book develops an alternative conceptual model in which oscillatory systems of various types interact with each other through coupling forces, and in which the relative energies of those systems are organized in particular ways. Tilsen emphasizes that the two primary mechanisms of the approach β€“ oscillators and energy levels β€“ require alternative ways of thinking about time. Furthermore, his theory leads to a new way of thinking about grammaticality and the recursive nature of language. The theory is applied to a variety of syntactic phenomena: word order, phrase structure, morphosyntax, constituency, case systems, ellipsis, anaphora, and islands. The book also presents a general program for the study of language in which the construction of linguistic theories is itself an object of theoretical analysis. Reviewed by John Goldsmith, Mark Gibson and an anonymous reviewer. Signed reports are openly available in the downloads session

    Syntax with oscillators and energy levels

    Get PDF
    This book presents a new approach to studying the syntax of human language, one which emphasizes how we think about time. Tilsen argues that many current theories are unsatisfactory because those theories conceptualize syntactic patterns with spatially arranged structures of objects. These object-structures are atemporal and do not lend well to reasoning about time. The book develops an alternative conceptual model in which oscillatory systems of various types interact with each other through coupling forces, and in which the relative energies of those systems are organized in particular ways. Tilsen emphasizes that the two primary mechanisms of the approach β€“ oscillators and energy levels β€“ require alternative ways of thinking about time. Furthermore, his theory leads to a new way of thinking about grammaticality and the recursive nature of language. The theory is applied to a variety of syntactic phenomena: word order, phrase structure, morphosyntax, constituency, case systems, ellipsis, anaphora, and islands. The book also presents a general program for the study of language in which the construction of linguistic theories is itself an object of theoretical analysis. Reviewed by John Goldsmith, Mark Gibson and an anonymous reviewer. Signed reports are openly available in the downloads session

    Syntax with oscillators and energy levels

    Get PDF
    This book presents a new approach to studying the syntax of human language, one which emphasizes how we think about time. Tilsen argues that many current theories are unsatisfactory because those theories conceptualize syntactic patterns with spatially arranged structures of objects. These object-structures are atemporal and do not lend well to reasoning about time. The book develops an alternative conceptual model in which oscillatory systems of various types interact with each other through coupling forces, and in which the relative energies of those systems are organized in particular ways. Tilsen emphasizes that the two primary mechanisms of the approach β€“ oscillators and energy levels β€“ require alternative ways of thinking about time. Furthermore, his theory leads to a new way of thinking about grammaticality and the recursive nature of language. The theory is applied to a variety of syntactic phenomena: word order, phrase structure, morphosyntax, constituency, case systems, ellipsis, anaphora, and islands. The book also presents a general program for the study of language in which the construction of linguistic theories is itself an object of theoretical analysis. Reviewed by John Goldsmith, Mark Gibson and an anonymous reviewer. Signed reports are openly available in the downloads session

    Syntax with oscillators and energy levels

    Get PDF
    This book presents a new approach to studying the syntax of human language, one which emphasizes how we think about time. Tilsen argues that many current theories are unsatisfactory because those theories conceptualize syntactic patterns with spatially arranged structures of objects. These object-structures are atemporal and do not lend well to reasoning about time. The book develops an alternative conceptual model in which oscillatory systems of various types interact with each other through coupling forces, and in which the relative energies of those systems are organized in particular ways. Tilsen emphasizes that the two primary mechanisms of the approach β€“ oscillators and energy levels β€“ require alternative ways of thinking about time. Furthermore, his theory leads to a new way of thinking about grammaticality and the recursive nature of language. The theory is applied to a variety of syntactic phenomena: word order, phrase structure, morphosyntax, constituency, case systems, ellipsis, anaphora, and islands. The book also presents a general program for the study of language in which the construction of linguistic theories is itself an object of theoretical analysis. Reviewed by John Goldsmith, Mark Gibson and an anonymous reviewer. Signed reports are openly available in the downloads session

    Syntax with oscillators and energy levels

    Get PDF
    This book presents a new approach to studying the syntax of human language, one which emphasizes how we think about time. Tilsen argues that many current theories are unsatisfactory because those theories conceptualize syntactic patterns with spatially arranged structures of objects. These object-structures are atemporal and do not lend well to reasoning about time. The book develops an alternative conceptual model in which oscillatory systems of various types interact with each other through coupling forces, and in which the relative energies of those systems are organized in particular ways. Tilsen emphasizes that the two primary mechanisms of the approach β€“ oscillators and energy levels β€“ require alternative ways of thinking about time. Furthermore, his theory leads to a new way of thinking about grammaticality and the recursive nature of language. The theory is applied to a variety of syntactic phenomena: word order, phrase structure, morphosyntax, constituency, case systems, ellipsis, anaphora, and islands. The book also presents a general program for the study of language in which the construction of linguistic theories is itself an object of theoretical analysis. Reviewed by John Goldsmith, Mark Gibson and an anonymous reviewer. Signed reports are openly available in the downloads session
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