Online Embedding Compression for Text Classification using Low Rank Matrix Factorization

Deep learning models have become state of the art for natural language processing (NLP) tasks, however deploying these models in production system poses significant memory constraints. Existing compression methods are either lossy or introduce significant latency. We propose a compression method that leverages low rank matrix factorization during training,to compress the word embedding layer which represents the size bottleneck for most NLP models. Our models are trained, compressed and then further re-trained on the downstream task to recover accuracy while maintaining the reduced size. Empirically, we show that the proposed method can achieve 90% compression with minimal impact in accuracy for sentence classification tasks, and outperforms alternative methods like fixed-point quantization or offline word embedding compression. We also analyze the inference time and storage space for our method through FLOP calculations, showing that we can compress DNN models by a configurable ratio and regain accuracy loss without introducing additional latency compared to fixed point quantization. Finally, we introduce a novel learning rate schedule, the Cyclically Annealed Learning Rate (CALR), which we empirically demonstrate to outperform other popular adaptive learning rate algorithms on a sentence classification benchmark.Comment: Accepted in Thirty-Third AAAI Conference on Artificial Intelligence (AAAI 2019

Retrieve-and-Read: Multi-task Learning of Information Retrieval and Reading Comprehension

This study considers the task of machine reading at scale (MRS) wherein, given a question, a system first performs the information retrieval (IR) task of finding relevant passages in a knowledge source and then carries out the reading comprehension (RC) task of extracting an answer span from the passages. Previous MRS studies, in which the IR component was trained without considering answer spans, struggled to accurately find a small number of relevant passages from a large set of passages. In this paper, we propose a simple and effective approach that incorporates the IR and RC tasks by using supervised multi-task learning in order that the IR component can be trained by considering answer spans. Experimental results on the standard benchmark, answering SQuAD questions using the full Wikipedia as the knowledge source, showed that our model achieved state-of-the-art performance. Moreover, we thoroughly evaluated the individual contributions of our model components with our new Japanese dataset and SQuAD. The results showed significant improvements in the IR task and provided a new perspective on IR for RC: it is effective to teach which part of the passage answers the question rather than to give only a relevance score to the whole passage.Comment: 10 pages, 6 figure. Accepted as a full paper at CIKM 201

Chatbot development to assist patients in health care services

Dissertação de mestrado integrado em Engenharia InformáticaDados de alta qualidade sobre tratamentos médicos e de informação técnica tornaram-se acessíveis, criando novas oportunidades de E-Saúde para a recuperação de um paciente. A implementação da aprendizagem automática nestas soluções provou ser essencial e eficaz na elaboração de aplicações para o utilizador para aliviar a sobrecarga do sector de saúde. Atualmente, muitas interações com os utentes são realizadas via telefonemas e mensagens de texto. Os agentes de conversação podem responder a estas questões, fomentando uma rápida interação com os pacientes. O objetivo fundamental desta dissertação é prestar apoio aos pacientes, fornecendo uma fonte de informação fidedigna que lhes permita instruir-se e esclarecer dúvidas sobre os procedimentos e repercussões dos seus problemas de saúde. Este propósito foi concretizado não apenas através de uma plataforma Web intuitiva e acessível, composta por perguntas frequentes, mas também integrando um agente de conversação inteligente para responder a questões. Para este fim, cientificamente, foi necessário conduzir a investigação, implementação e viabilidade dos agentes de conversação no domínio fechado para os cuidados de saúde. Constitui um importante contributo para a comunidade de desenvolvimento de chatbots, na qual se reúnem as últimas inovações e descobertas, bem os desafios actuais da aprendizagem automática, contribuindo para a consciencialização desta área.High-quality data on medical treatments and facility-level information has become accessible, creating new eHealth opportunities for the recuperation of a patient. Machine learning implementation in these solutions has been proven to be essential and effective in building user-centred applications to relieves the burden on the healthcare sector. Nowadays, many patient interactions are handled through healthcare services via phone calls and text message exchange. Conversation agents can provide answers to these queries, promoting fast patient interaction. The underlying aim of this dissertation is to assist patients by providing a reliable source of information to educate themselves and clarify any doubts about procedures and implications of their health issue. This purpose was achieved not only through an intuitive and accessible web platform, with frequently asked questions, but also by integrating an intelligent chatting agent to answer questions. To this end, scientifically, it was necessary to conduct the research, implementation and feasibility of closed-domain conversation agents for healthcare. It is a valuable input for the chatbot development community, which assembles the latest innovations and findings, as well as the current challenges of machine learning, contributing to the awareness of this field

Neural Representations of Concepts and Texts for Biomedical Information Retrieval

Information retrieval (IR) methods are an indispensable tool in the current landscape of exponentially increasing textual data, especially on the Web. A typical IR task involves fetching and ranking a set of documents (from a large corpus) in terms of relevance to a user\u27s query, which is often expressed as a short phrase. IR methods are the backbone of modern search engines where additional system-level aspects including fault tolerance, scale, user interfaces, and session maintenance are also addressed. In addition to fetching documents, modern search systems may also identify snippets within the documents that are potentially most relevant to the input query. Furthermore, current systems may also maintain preprocessed structured knowledge derived from textual data as so called knowledge graphs, so certain types of queries that are posed as questions can be parsed as such; a response can be an output of one or more named entities instead of a ranked list of documents (e.g., what diseases are associated with EGFR mutations? ). This refined setup is often termed as question answering (QA) in the IR and natural language processing (NLP) communities. In biomedicine and healthcare, specialized corpora are often at play including research articles by scientists, clinical notes generated by healthcare professionals, consumer forums for specific conditions (e.g., cancer survivors network), and clinical trial protocols (e.g., www.clinicaltrials.gov). Biomedical IR is specialized given the types of queries and the variations in the texts are different from that of general Web documents. For example, scientific articles are more formal with longer sentences but clinical notes tend to have less grammatical conformity and are rife with abbreviations. There is also a mismatch between the vocabulary of consumers and the lingo of domain experts and professionals. Queries are also different and can range from simple phrases (e.g., COVID-19 symptoms ) to more complex implicitly fielded queries (e.g., chemotherapy regimens for stage IV lung cancer patients with ALK mutations ). Hence, developing methods for different configurations (corpus, query type, user type) needs more deliberate attention in biomedical IR. Representations of documents and queries are at the core of IR methods and retrieval methodology involves coming up with these representations and matching queries with documents based on them. Traditional IR systems follow the approach of keyword based indexing of documents (the so called inverted index) and matching query phrases against the document index. It is not difficult to see that this keyword based matching ignores the semantics of texts (synonymy at the lexeme level and entailment at phrase/clause/sentence levels) and this has lead to dimensionality reduction methods such as latent semantic indexing that generally have scale-related concerns; such methods also do not address similarity at the sentence level. Since the resurgence of neural network methods in NLP, the IR field has also moved to incorporate advances in neural networks into current IR methods. This dissertation presents four specific methodological efforts toward improving biomedical IR. Neural methods always begin with dense embeddings for words and concepts to overcome the limitations of one-hot encoding in traditional NLP/IR. In the first effort, we present a new neural pre-training approach to jointly learn word and concept embeddings for downstream use in applications. In the second study, we present a joint neural model for two essential subtasks of information extraction (IE): named entity recognition (NER) and entity normalization (EN). Our method detects biomedical concept phrases in texts and links them to the corresponding semantic types and entity codes. These first two studies provide essential tools to model textual representations as compositions of both surface forms (lexical units) and high level concepts with potential downstream use in QA. In the third effort, we present a document reranking model that can help surface documents that are likely to contain answers (e.g, factoids, lists) to a question in a QA task. The model is essentially a sentence matching neural network that learns the relevance of a candidate answer sentence to the given question parametrized with a bilinear map. In the fourth effort, we present another document reranking approach that is tailored for precision medicine use-cases. It combines neural query-document matching and faceted text summarization. The main distinction of this effort from previous efforts is to pivot from a query manipulation setup to transforming candidate documents into pseudo-queries via neural text summarization. Overall, our contributions constitute nontrivial advances in biomedical IR using neural representations of concepts and texts

Learning to Answer Semantic Queries over Code

During software development, developers need answers to queries about semantic aspects of code. Even though extractive question-answering using neural approaches has been studied widely in natural languages, the problem of answering semantic queries over code using neural networks has not yet been explored. This is mainly because there is no existing dataset with extractive question and answer pairs over code involving complex concepts and long chains of reasoning. We bridge this gap by building a new, curated dataset called CodeQueries, and proposing a neural question-answering methodology over code. We build upon state-of-the-art pre-trained models of code to predict answer and supporting-fact spans. Given a query and code, only some of the code may be relevant to answer the query. We first experiment under an ideal setting where only the relevant code is given to the model and show that our models do well. We then experiment under three pragmatic considerations: (1) scaling to large-size code, (2) learning from a limited number of examples and (3) robustness to minor syntax errors in code. Our results show that while a neural model can be resilient to minor syntax errors in code, increasing size of code, presence of code that is not relevant to the query, and reduced number of training examples limit the model performance. We are releasing our data and models to facilitate future work on the proposed problem of answering semantic queries over code