3,652 research outputs found
MonetDB/XQuery: a fast XQuery processor powered by a relational engine
Relational XQuery systems try to re-use mature relational data management infrastructures to create fast and scalable XML database technology. This paper describes the main features, key contributions, and lessons learned while implementing such a system. Its architecture consists of (i) a range-based encoding of XML documents into relational tables, (ii) a compilation technique that translates XQuery into a basic relational algebra, (iii) a restricted (order) property-aware peephole relational query optimization strategy, and (iv) a mapping from XML update statements into relational updates. Thus, this system implements all essential XML database functionalities (rather than a single feature) such that we can learn from the full consequences of our architectural decisions. While implementing this system, we had to extend the state-of-the-art with a number of new technical contributions, such as loop-lifted staircase join and efficient relational query evaluation strategies for XQuery theta-joins with existential semantics. These contributions as well as the architectural lessons learned are also deemed valuable for other relational back-end engines. The performance and scalability of the resulting system is evaluated on the XMark benchmark up to data sizes of 11GB. The performance section also provides an extensive benchmark comparison of all major XMark results published previously, which confirm that the goal of purely relational XQuery processing, namely speed and scalability, was met
Structural graph matching using the EM algorithm and singular value decomposition
This paper describes an efficient algorithm for inexact graph matching. The method is purely structural, that is, it uses only the edge or connectivity structure of the graph and does not draw on node or edge attributes. We make two contributions: 1) commencing from a probability distribution for matching errors, we show how the problem of graph matching can be posed as maximum-likelihood estimation using the apparatus of the EM algorithm; and 2) we cast the recovery of correspondence matches between the graph nodes in a matrix framework. This allows one to efficiently recover correspondence matches using the singular value decomposition. We experiment with the method on both real-world and synthetic data. Here, we demonstrate that the method offers comparable performance to more computationally demanding method
CESI: Canonicalizing Open Knowledge Bases using Embeddings and Side Information
Open Information Extraction (OpenIE) methods extract (noun phrase, relation
phrase, noun phrase) triples from text, resulting in the construction of large
Open Knowledge Bases (Open KBs). The noun phrases (NPs) and relation phrases in
such Open KBs are not canonicalized, leading to the storage of redundant and
ambiguous facts. Recent research has posed canonicalization of Open KBs as
clustering over manuallydefined feature spaces. Manual feature engineering is
expensive and often sub-optimal. In order to overcome this challenge, we
propose Canonicalization using Embeddings and Side Information (CESI) - a novel
approach which performs canonicalization over learned embeddings of Open KBs.
CESI extends recent advances in KB embedding by incorporating relevant NP and
relation phrase side information in a principled manner. Through extensive
experiments on multiple real-world datasets, we demonstrate CESI's
effectiveness.Comment: Accepted at WWW 201
Transforming Graph Representations for Statistical Relational Learning
Relational data representations have become an increasingly important topic
due to the recent proliferation of network datasets (e.g., social, biological,
information networks) and a corresponding increase in the application of
statistical relational learning (SRL) algorithms to these domains. In this
article, we examine a range of representation issues for graph-based relational
data. Since the choice of relational data representation for the nodes, links,
and features can dramatically affect the capabilities of SRL algorithms, we
survey approaches and opportunities for relational representation
transformation designed to improve the performance of these algorithms. This
leads us to introduce an intuitive taxonomy for data representation
transformations in relational domains that incorporates link transformation and
node transformation as symmetric representation tasks. In particular, the
transformation tasks for both nodes and links include (i) predicting their
existence, (ii) predicting their label or type, (iii) estimating their weight
or importance, and (iv) systematically constructing their relevant features. We
motivate our taxonomy through detailed examples and use it to survey and
compare competing approaches for each of these tasks. We also discuss general
conditions for transforming links, nodes, and features. Finally, we highlight
challenges that remain to be addressed
Mining Brain Networks using Multiple Side Views for Neurological Disorder Identification
Mining discriminative subgraph patterns from graph data has attracted great
interest in recent years. It has a wide variety of applications in disease
diagnosis, neuroimaging, etc. Most research on subgraph mining focuses on the
graph representation alone. However, in many real-world applications, the side
information is available along with the graph data. For example, for
neurological disorder identification, in addition to the brain networks derived
from neuroimaging data, hundreds of clinical, immunologic, serologic and
cognitive measures may also be documented for each subject. These measures
compose multiple side views encoding a tremendous amount of supplemental
information for diagnostic purposes, yet are often ignored. In this paper, we
study the problem of discriminative subgraph selection using multiple side
views and propose a novel solution to find an optimal set of subgraph features
for graph classification by exploring a plurality of side views. We derive a
feature evaluation criterion, named gSide, to estimate the usefulness of
subgraph patterns based upon side views. Then we develop a branch-and-bound
algorithm, called gMSV, to efficiently search for optimal subgraph features by
integrating the subgraph mining process and the procedure of discriminative
feature selection. Empirical studies on graph classification tasks for
neurological disorders using brain networks demonstrate that subgraph patterns
selected by the multi-side-view guided subgraph selection approach can
effectively boost graph classification performances and are relevant to disease
diagnosis.Comment: in Proceedings of IEEE International Conference on Data Mining (ICDM)
201
Numeric Input Relations for Relational Learning with Applications to Community Structure Analysis
Most work in the area of statistical relational learning (SRL) is focussed on
discrete data, even though a few approaches for hybrid SRL models have been
proposed that combine numerical and discrete variables. In this paper we
distinguish numerical random variables for which a probability distribution is
defined by the model from numerical input variables that are only used for
conditioning the distribution of discrete response variables. We show how
numerical input relations can very easily be used in the Relational Bayesian
Network framework, and that existing inference and learning methods need only
minor adjustments to be applied in this generalized setting. The resulting
framework provides natural relational extensions of classical probabilistic
models for categorical data. We demonstrate the usefulness of RBN models with
numeric input relations by several examples.
In particular, we use the augmented RBN framework to define probabilistic
models for multi-relational (social) networks in which the probability of a
link between two nodes depends on numeric latent feature vectors associated
with the nodes. A generic learning procedure can be used to obtain a
maximum-likelihood fit of model parameters and latent feature values for a
variety of models that can be expressed in the high-level RBN representation.
Specifically, we propose a model that allows us to interpret learned latent
feature values as community centrality degrees by which we can identify nodes
that are central for one community, that are hubs between communities, or that
are isolated nodes. In a multi-relational setting, the model also provides a
characterization of how different relations are associated with each community
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