Stochastic finite differences for elliptic diffusion equations in stratified domains

International audienceWe describe Monte Carlo algorithms to solve elliptic partial differen- tial equations with piecewise constant diffusion coefficients and general boundary conditions including Robin and transmission conditions as well as a damping term. The treatment of the boundary conditions is done via stochastic finite differences techniques which possess an higher order than the usual methods. The simulation of Brownian paths inside the domain relies on variations around the walk on spheres method with or without killing. We check numerically the efficiency of our algorithms on various examples of diffusion equations illustrating each of the new techniques introduced here

A Partially Reflecting Random Walk on Spheres Algorithm for Electrical Impedance Tomography

In this work, we develop a probabilistic estimator for the voltage-to-current map arising in electrical impedance tomography. This novel so-called partially reflecting random walk on spheres estimator enables Monte Carlo methods to compute the voltage-to-current map in an embarrassingly parallel manner, which is an important issue with regard to the corresponding inverse problem. Our method uses the well-known random walk on spheres algorithm inside subdomains where the diffusion coefficient is constant and employs replacement techniques motivated by finite difference discretization to deal with both mixed boundary conditions and interface transmission conditions. We analyze the global bias and the variance of the new estimator both theoretically and experimentally. In a second step, the variance is considerably reduced via a novel control variate conditional sampling technique

Monte Carlo methods for linear and non-linear Poisson-Boltzmann equation

The electrostatic potential in the neighborhood of a biomolecule can be computed thanks to the non-linear divergence-form elliptic Poisson-Boltzmann PDE. Dedicated Monte-Carlo methods have been developed to solve its linearized version (see e.g.Bossy et al 2009, Mascagni & Simonov 2004}). These algorithms combine walk on spheres techniques and appropriate replacements at the boundary of the molecule. In the first part of this article we compare recent replacement methods for this linearized equation on real size biomolecules, that also require efficient computational geometry algorithms. We compare our results with the deterministic solver APBS. In the second part, we prove a new probabilistic interpretation of the nonlinear Poisson-Boltzmann PDE. A Monte Carlo algorithm is also derived and tested on a simple test case