On Reject and Refine Options in Multicategory Classification

In many real applications of statistical learning, a decision made from misclassification can be too costly to afford; in this case, a reject option, which defers the decision until further investigation is conducted, is often preferred. In recent years, there has been much development for binary classification with a reject option. Yet, little progress has been made for the multicategory case. In this article, we propose margin-based multicategory classification methods with a reject option. In addition, and more importantly, we introduce a new and unique refine option for the multicategory problem, where the class of an observation is predicted to be from a set of class labels, whose cardinality is not necessarily one. The main advantage of both options lies in their capacity of identifying error-prone observations. Moreover, the refine option can provide more constructive information for classification by effectively ruling out implausible classes. Efficient implementations have been developed for the proposed methods. On the theoretical side, we offer a novel statistical learning theory and show a fast convergence rate of the excess $\ell$-risk of our methods with emphasis on diverging dimensionality and number of classes. The results can be further improved under a low noise assumption. A set of comprehensive simulation and real data studies has shown the usefulness of the new learning tools compared to regular multicategory classifiers. Detailed proofs of theorems and extended numerical results are included in the supplemental materials available online.Comment: A revised version of this paper was accepted for publication in the Journal of the American Statistical Association Theory and Methods Section. 52 pages, 6 figure

Extending twin support vector machine classifier for multi-category classification problems

© 2013 – IOS Press and the authors. All rights reservedTwin support vector machine classifier (TWSVM) was proposed by Jayadeva et al., which was used for binary classification problems. TWSVM not only overcomes the difficulties in handling the problem of exemplar unbalance in binary classification problems, but also it is four times faster in training a classifier than classical support vector machines. This paper proposes one-versus-all twin support vector machine classifiers (OVA-TWSVM) for multi-category classification problems by utilizing the strengths of TWSVM. OVA-TWSVM extends TWSVM to solve k-category classification problems by developing k TWSVM where in the ith TWSVM, we only solve the Quadratic Programming Problems (QPPs) for the ith class, and get the ith nonparallel hyperplane corresponding to the ith class data. OVA-TWSVM uses the well known one-versus-all (OVA) approach to construct a corresponding twin support vector machine classifier. We analyze the efficiency of the OVA-TWSVM theoretically, and perform experiments to test its efficiency on both synthetic data sets and several benchmark data sets from the UCI machine learning repository. Both the theoretical analysis and experimental results demonstrate that OVA-TWSVM can outperform the traditional OVA-SVMs classifier. Further experimental comparisons with other multiclass classifiers demonstrated that comparable performance could be achieved.This work is supported in part by the grant of the Fundamental Research Funds for the Central Universities of GK201102007 in PR China, and is also supported by Natural Science Basis Research Plan in Shaanxi Province of China (Program No.2010JM3004), and is at the same time supported by Chinese Academy of Sciences under the Innovative Group Overseas Partnership Grant as well as Natural Science Foundation of China Major International Joint Research Project (NO.71110107026)

Elephant Search with Deep Learning for Microarray Data Analysis

Even though there is a plethora of research in Microarray gene expression data analysis, still, it poses challenges for researchers to effectively and efficiently analyze the large yet complex expression of genes. The feature (gene) selection method is of paramount importance for understanding the differences in biological and non-biological variation between samples. In order to address this problem, a novel elephant search (ES) based optimization is proposed to select best gene expressions from the large volume of microarray data. Further, a promising machine learning method is envisioned to leverage such high dimensional and complex microarray dataset for extracting hidden patterns inside to make a meaningful prediction and most accurate classification. In particular, stochastic gradient descent based Deep learning (DL) with softmax activation function is then used on the reduced features (genes) for better classification of different samples according to their gene expression levels. The experiments are carried out on nine most popular Cancer microarray gene selection datasets, obtained from UCI machine learning repository. The empirical results obtained by the proposed elephant search based deep learning (ESDL) approach are compared with most recent published article for its suitability in future Bioinformatics research.Comment: 12 pages, 5 Tabl

Multiclass Learning with Simplex Coding

In this paper we discuss a novel framework for multiclass learning, defined by a suitable coding/decoding strategy, namely the simplex coding, that allows to generalize to multiple classes a relaxation approach commonly used in binary classification. In this framework, a relaxation error analysis can be developed avoiding constraints on the considered hypotheses class. Moreover, we show that in this setting it is possible to derive the first provably consistent regularized method with training/tuning complexity which is independent to the number of classes. Tools from convex analysis are introduced that can be used beyond the scope of this paper