44,739 research outputs found
1/f spectrum and memory function analysis of solvation dynamics in a room-temperature ionic liquid
To understand the non-exponential relaxation associated with solvation
dynamics in the ionic liquid 1-ethyl-3-methylimidazolium hexafluorophosphate,
we study power spectra of the fluctuating Franck-Condon energy gap of a
diatomic probe solute via molecular dynamics simulations. Results show 1/f
dependence in a wide frequency range over 2 to 3 decades, indicating
distributed relaxation times. We analyze the memory function and solvation time
in the framework of the generalized Langevin equation using a simple model
description for the power spectrum. It is found that the crossover frequency
toward the white noise plateau is directly related to the time scale for the
memory function and thus the solvation time. Specifically, the low crossover
frequency observed in the ionic liquid leads to a slowly-decaying tail in its
memory function and long solvation time. By contrast, acetonitrile
characterized by a high crossover frequency and (near) absence of 1/f behavior
in its power spectra shows fast relaxation of the memory function and
single-exponential decay of solvation dynamics in the long-time regime.Comment: 10 pages, 4 figure
Electrostatic solvation free energies of charged hard spheres using molecular dynamics with density functional theory interactions
Determining the solvation free energies of single ions in water is one of the
most fundamental problems in physical chemistry and yet many unresolved
questions remain. In particular, the ability to decompose the solvation free
energy into simple and intuitive contributions will have important implications
for models of electrolyte solution. Here, we provide definitions of the various
types of single ion solvation free energies based on different simulation
protocols. We calculate solvation free energies of charged hard spheres using
density functional theory interaction potentials with molecular dynamics
simulation (DFT-MD) and isolate the effects of charge and cavitation, comparing
to the Born (linear response) model. We show that using uncorrected Ewald
summation leads to unphysical values for the single ion solvation free energy
and that charging free energies for cations are approximately linear as a
function of charge but that there is a small non-linearity for small anions.
The charge hydration asymmetry (CHA) for hard spheres, determined with quantum
mechanics, is much larger than for the analogous real ions. This suggests that
real ions, particularly anions, are significantly more complex than simple
charged hard spheres, a commonly employed representation.Comment: 28 pages, 5 figure
Ab initio molecular dynamics simulations of Aluminum solvation
The solvation of Al and its hydrolyzed species in water clusters has been
studied by means of ab initio molecular dynamics simulations. The hexa-hydrate
aluminum ion formed a stable complex in the finite temperature cluster
simulation of one aluminum ion and 16 waters. The average dipole moment of
strongly polarized hydrated water molecules in the first solvation shell of the
hexa-hydrate aluminum ion was found to be 5.02 Debye. The deprotonated
hexa-hydrate complex evolves into a tetra-coordinated aluminate ion with two
water molecules in the second solvation shell forming hydrogen bonds to the
hydroxyl groups in agreement with the observed coordination.Comment: 12 pages in Elsevier LaTeX, 5 figures in Postscript, 2 last figures
are in color, submitted to Chemical Physics Letter
Competitive Solvation of the Imidazolium Cation by Water and Methanol
Imidazolium-based ionic liquids are widely used in conjunction with molecular
liquids for various applications. Solvation, miscibility and similar properties
are of fundamental importance for successful implementation of theoretical
schemes. This work reports competitive solvation of the 1,3-dimethylimidazolium
cation by water and methanol. Employing molecular dynamics simulations powered
by semiempirical Hamiltonian (electronic structure level of description), the
local structure nearly imidazolium cation is described in terms of radial
distribution functions. Although water and methanol are chemically similar,
water appears systematically more successful in solvating the
1,3-dimethylimidazolium cation. This result fosters construction of future
applications of the ternary ion-molecular systems
Ab Initio Molecular Dynamics Study of Aqueous Solvation of Ethanol and Ethylene
The structure and dynamics of aqueous solvation of ethanol and ethylene are
studied by DFT-based Car-Parrinello molecular dynamics. We did not find an
enhancement of the structure of the hydrogen bonded network of hydrating water
molecules. Both ethanol and ethylene can easily be accommodated in the
hydrogen-bonded network of water molecules without altering its structure. This
is supports the conclusion from recent neutron diffraction experiments that
there is no hydrophobic hydration around small hydrophobic groups. Analysis of
the electronic charge distribution using Wannier functions shows that the
dipole moment of ethanol increases from 1.8 D to 3.1 D upon solvation, while
the apolar ethylene molecule attains an average dipole moment of 0.5 D. For
ethylene, we identified configurations with -H bonded water molecules,
that have rare four-fold hydrogen-bonded water coordination, yielding
instantaneous dipole moments of ethylene of up to 1 D. The results provide
valuable information for the improvement of empirical force fields, and point
out that for an accurate description of the aqueous solvation of ethanol, and
even of the apolar ethylene, polarizable force fields are required.Comment: 15 pages, 10 figures, 4 tables, revtex4, submitted to J. Chem. Phy
Dynamical coupling between protein conformational fluctuation and hydration water: Heterogeneous dynamics of biological water
We investigate dynamical coupling between water and amino acid side-chain
residues in solvation dynamics by selecting residues often used as natural
probes, namely tryptophan, tyrosine and histidine, located at different
positions on protein surface and having various degrees of solvent exposure.
Such differently placed residues are found to exhibit different timescales of
relaxation. The total solvation response, as measured by the probe is
decomposed in terms of its interactions with (i) protein core, (ii) side-chain
atoms and (iii) water molecules. Significant anti cross-correlations among
these contributions are observed as a result of side-chain assisted energy flow
between protein core and hydration layer, which is important for the proper
functionality of a protein. It is also observed that there are rotationally
faster as well as slower water molecules than that of bulk solvent, which are
considered to be responsible for the multitude of timescales that are observed
in solvation dynamics. We also establish that slow solvation derives a
significant contribution from protein side-chain fluctuations. When the motion
of the protein side-chains is forcefully quenched, solvation either becomes
faster or slower depending on the location of the probe.Comment: 12 pages and 6 figures(coloured
Li+ solvation in pure, binary and ternary mixtures of organic carbonate electrolytes
Classical molecular dynamics (MD) simulations and quantum chemical density
functional theory (DFT) calculations have been employed in the present study to
investigate the solvation of lithium cations in pure organic carbonate solvents
(ethylene carbonate (EC), propylene carbonate (PC) and dimethyl carbonate
(DMC)) and their binary (EC-DMC, 1:1 molar composition) and ternary (EC-DMC-PC,
1:1:3 molar composition) mixtures. The results obtained by both methods
indicate that the formation of complexes with four solvent molecules around
Li+, exhibiting a strong local tetrahedral order, is the most favorable.
However, the molecular dynamics simulations have revealed the existence of
significant structural heterogeneities, extending up to a length scale which is
more than five times the size of the first coordination shell radius. Due to
these significant structural fluctuations in the bulk liquid phases, the use of
larger size clusters in DFT calculations has been suggested. Contrary to the
findings of the DFT calculations on small isolated clusters, the MD simulations
have predicted a preference of Li+ to interact with DMC molecules within its
first solvation shell and not with the highly polar EC and PC ones, in the
binary and ternary mixtures. This behavior has been attributed to the local
tetrahedral packing of the solvent molecules in the first solvation shell of
Li+, which causes a cancellation of the individual molecular dipole vectors,
and this effect seems to be more important in the cases where molecules of the
same type are present. Due to these cancellation effects, the total dipole in
the first solvation shell of Li+ increases when the local mole fraction of DMC
is high
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