Proceedings of the second "international Traveling Workshop on Interactions between Sparse models and Technology" (iTWIST'14)

The implicit objective of the biennial "international - Traveling Workshop on Interactions between Sparse models and Technology" (iTWIST) is to foster collaboration between international scientific teams by disseminating ideas through both specific oral/poster presentations and free discussions. For its second edition, the iTWIST workshop took place in the medieval and picturesque town of Namur in Belgium, from Wednesday August 27th till Friday August 29th, 2014. The workshop was conveniently located in "The Arsenal" building within walking distance of both hotels and town center. iTWIST'14 has gathered about 70 international participants and has featured 9 invited talks, 10 oral presentations, and 14 posters on the following themes, all related to the theory, application and generalization of the "sparsity paradigm": Sparsity-driven data sensing and processing; Union of low dimensional subspaces; Beyond linear and convex inverse problem; Matrix/manifold/graph sensing/processing; Blind inverse problems and dictionary learning; Sparsity and computational neuroscience; Information theory, geometry and randomness; Complexity/accuracy tradeoffs in numerical methods; Sparsity? What's next?; Sparse machine learning and inference.Comment: 69 pages, 24 extended abstracts, iTWIST'14 website: http://sites.google.com/site/itwist1

Holoscopic 3D image depth estimation and segmentation techniques

This thesis was submitted for the award of Doctor of Philosophy and was awarded by Brunel University LondonToday’s 3D imaging techniques offer significant benefits over conventional 2D imaging techniques. The presence of natural depth information in the scene affords the observer an overall improved sense of reality and naturalness. A variety of systems attempting to reach this goal have been designed by many independent research groups, such as stereoscopic and auto-stereoscopic systems. Though the images displayed by such systems tend to cause eye strain, fatigue and headaches after prolonged viewing as users are required to focus on the screen plane/accommodation to converge their eyes to a point in space in a different plane/convergence. Holoscopy is a 3D technology that targets overcoming the above limitations of current 3D technology and was recently developed at Brunel University. This work is part W4.1 of the 3D VIVANT project that is funded by the EU under the ICT program and coordinated by Dr. Aman Aggoun at Brunel University, West London, UK. The objective of the work described in this thesis is to develop estimation and segmentation techniques that are capable of estimating precise 3D depth, and are applicable for holoscopic 3D imaging system. Particular emphasis is given to the task of automatic techniques i.e. favours algorithms with broad generalisation abilities, as no constraints are placed on the setting. Algorithms that provide invariance to most appearance based variation of objects in the scene (e.g. viewpoint changes, deformable objects, presence of noise and changes in lighting). Moreover, have the ability to estimate depth information from both types of holoscopic 3D images i.e. Unidirectional and Omni-directional which gives horizontal parallax and full parallax (vertical and horizontal), respectively. The main aim of this research is to develop 3D depth estimation and 3D image segmentation techniques with great precision. In particular, emphasis on automation of thresholding techniques and cues identifications for development of robust algorithms. A method for depth-through-disparity feature analysis has been built based on the existing correlation between the pixels at a one micro-lens pitch which has been exploited to extract the viewpoint images (VPIs). The corresponding displacement among the VPIs has been exploited to estimate the depth information map via setting and extracting reliable sets of local features. ii Feature-based-point and feature-based-edge are two novel automatic thresholding techniques for detecting and extracting features that have been used in this approach. These techniques offer a solution to the problem of setting and extracting reliable features automatically to improve the performance of the depth estimation related to the generalizations, speed and quality. Due to the resolution limitation of the extracted VPIs, obtaining an accurate 3D depth map is challenging. Therefore, sub-pixel shift and integration is a novel interpolation technique that has been used in this approach to generate super-resolution VPIs. By shift and integration of a set of up-sampled low resolution VPIs, the new information contained in each viewpoint is exploited to obtain a super resolution VPI. This produces a high resolution perspective VPI with wide Field Of View (FOV). This means that the holoscopic 3D image system can be converted into a multi-view 3D image pixel format. Both depth accuracy and a fast execution time have been achieved that improved the 3D depth map. For a 3D object to be recognized the related foreground regions and depth information map needs to be identified. Two novel unsupervised segmentation methods that generate interactive depth maps from single viewpoint segmentation were developed. Both techniques offer new improvements over the existing methods due to their simple use and being fully automatic; therefore, producing the 3D depth interactive map without human interaction. The final contribution is a performance evaluation, to provide an equitable measurement for the extent of the success of the proposed techniques for foreground object segmentation, 3D depth interactive map creation and the generation of 2D super-resolution viewpoint techniques. The no-reference image quality assessment metrics and their correlation with the human perception of quality are used with the help of human participants in a subjective manner

Learning a Generative Motion Model from Image Sequences based on a Latent Motion Matrix

We propose to learn a probabilistic motion model from a sequence of images for spatio-temporal registration. Our model encodes motion in a low-dimensional probabilistic space - the motion matrix - which enables various motion analysis tasks such as simulation and interpolation of realistic motion patterns allowing for faster data acquisition and data augmentation. More precisely, the motion matrix allows to transport the recovered motion from one subject to another simulating for example a pathological motion in a healthy subject without the need for inter-subject registration. The method is based on a conditional latent variable model that is trained using amortized variational inference. This unsupervised generative model follows a novel multivariate Gaussian process prior and is applied within a temporal convolutional network which leads to a diffeomorphic motion model. Temporal consistency and generalizability is further improved by applying a temporal dropout training scheme. Applied to cardiac cine-MRI sequences, we show improved registration accuracy and spatio-temporally smoother deformations compared to three state-of-the-art registration algorithms. Besides, we demonstrate the model's applicability for motion analysis, simulation and super-resolution by an improved motion reconstruction from sequences with missing frames compared to linear and cubic interpolation.Comment: accepted at IEEE TM

A Research on Enhancing Reconstructed Frames in Video Codecs

A series of video codecs, combining encoder and decoder, have been developed to improve the human experience of video-on-demand: higher quality videos at lower bitrates. Despite being at the leading of the compression race, the High Efficiency Video Coding (HEVC or H.265), the latest Versatile Video Coding (VVC) standard, and compressive sensing (CS) are still suffering from lossy compression. Lossy compression algorithms approximate input signals by smaller file size but degrade reconstructed data, leaving space for further improvement. This work aims to develop hybrid codecs taking advantage of both state-of-the-art video coding technologies and deep learning techniques: traditional non-learning components will either be replaced or combined with various deep learning models. Note that related studies have not made the most of coding information, this work studies and utilizes more potential resources in both encoder and decoder for further improving different codecs.In the encoder, motion compensated prediction (MCP) is one of the key components that bring high compression ratios to video codecs. For enhancing the MCP performance, modern video codecs offer interpolation filters for fractional motions. However, these handcrafted fractional interpolation filters are designed on ideal signals, which limit the codecs in dealing with real-world video data. This proposal introduces a deep learning approach for all Luma and Chroma fractional pixels, aiming for more accurate motion compensation and coding efficiency.One extraordinary feature of CS compared to other codecs is that CS can recover multiple images at the decoder by applying various algorithms on the one and only coded data. Note that the related works have not made use of this property, this work enables a deep learning-based compressive sensing image enhancement framework using multiple reconstructed signals. Learning to enhance from multiple reconstructed images delivers a valuable mechanism for training deep neural networks while requiring no additional transmitted data.In the encoder and decoder of modern video coding standards, in-loop filters (ILF) dedicate the most important role in producing the final reconstructed image quality and compression rate. This work introduces a deep learning approach for improving the handcrafted ILF for modern video coding standards. We first utilize various coding resources and present novel deep learning-based ILF. Related works perform the rate-distortion-based ILF mode selection at the coding-tree-unit (CTU) level to further enhance the deep learning-based ILF, and the corresponding bits are encoded and transmitted to the decoder. In this work, we move towards a deeper approach: a reinforcement-learning based autonomous ILF mode selection scheme is presented, enabling the ability to adapt to different coding unit (CU) levels. Using this approach, we require no additional bits while ensuring the best image quality at local levels beyond the CTU level.While this research mainly targets improving the recent video coding standard VVC and the sparse-based CS, it is also flexibly designed to adapt the previous and future video coding standards with minor modifications.博士（工学）法政大学 (Hosei University

Surrogate-driven respiratory motion models for MRI-guided lung radiotherapy treatments

An MR-Linac integrates an MR scanner with a radiotherapy delivery system, providing non-ionizing real-time imaging of the internal anatomy before, during and after radiotherapy treatments. Due to spatio-temporal limitations of MR imaging, only high-resolution 2D cine-MR images can be acquired in real-time during MRI-guided radiotherapy (MRIgRT) to monitor the respiratory-induced motion of lung tumours and organs-at-risk. However, temporally-resolved 3D anatomical information is essential for accurate MR guidance of beam delivery and dose estimation of the actually delivered dose. Surrogate-driven respiratory motion models can estimate the 3D motion of the internal anatomy from surrogate signals, producing the required information. The overall aim of this thesis was to tailor a generalized respiratory motion modelling framework for lung MRIgRT. This framework can fit the model directly to unsorted 2D MR images sampling the 3D motion, and to surrogate signals extracted from the 2D cine-MR images acquired on an MR-Linac. It can model breath-to-breath variability and produce a motion compensated super-resolution reconstruction (MCSR) 3D image that can be deformed using the estimated motion. In this work novel MRI-derived surrogate signals were generated from 2D cine-MR images to model respiratory motion for lung cancer patients, by applying principal component analysis to the control point displacements obtained from the registration of the cine-MR images. An MR multi-slice interleaved acquisition potentially suitable for the MR-Linac was developed to generate MRI-derived surrogate signals and build accurate respiratory motion models with the generalized framework for lung cancer patients. The developed models and the MCSR images were thoroughly evaluated for lung cancer patients scanned on an MR-Linac. The results showed that respiratory motion models built with the generalized framework and minimal training data generally produced median errors within the MCSR voxel size of 2 mm, throughout the whole 3D thoracic field-of-view and over the expected lung MRIgRT treatment times