Transfer learning: bridging the gap between deep learning and domain-specific text mining

Inspired by the success of deep learning techniques in Natural Language Processing (NLP), this dissertation tackles the domain-specific text mining problems for which the generic deep learning approaches would fail. More specifically, the domain-specific problems are: (1) success prediction in crowdfunding, (2) variants identification in biomedical literature, and (3) text data augmentation for domains with low-resources. In the first part, transfer learning in a multimodal perspective is utilized to facilitate solving the project success prediction on the crowdfunding application. Even though the information in a project profile can be of different modalities such as text, images, and metadata, most existing prediction approaches leverage only the text modality. It is promising to utilize the visual images in project profiles to find out how images could contribute to the success prediction. An advanced neural network scheme is designed and evaluated combining information learned from different modalities for project success prediction. In the second part, transfer learning is combined with deep learning techniques to solve genomic variants Named Entity Recognition (NER) problems in biomedical literature. Most of the advanced generic NER algorithms can fail due to the restricted training corpus. However, those generic deep learning algorithms are capable of learning from a canonical corpus, without any effort on feature engineering. This work aims to build an end-to-end deep learning approach to transfer the domain-specific knowledge to those advanced generic NER algorithms, addressing the challenges in low-resource training and requiring neither hand-crafted features nor post-processing rules. For the last part, transfer learning with knowledge distillation and active learning are utilized to solve text augmentation for domains with low-resources. Most of the recent text augmentation methods heavily rely on large external resources. This work is dedicates to solving the text augmentation problem adaptively and consistently with minimal resources for token-level tasks like NER. The solution can also assure the reliability of machine labels for noisy data and can enhance training consistency with noisy labels. All the works are evaluated on different domain-specific benchmarks, respectively. Experimental results demonstrate the effectiveness of those proposed methods. The advantages also indicate promising potential for transfer learning in domain-specific applications

Similarity learning for person re-identification and semantic video retrieval

Many computer vision problems boil down to the learning of a good visual similarity function that calculates a score of how likely two instances share the same semantic concept. In this thesis, we focus on two problems related to similarity learning: Person Re-Identification, and Semantic Video Retrieval. Person Re-Identification aims to maintain the identity of an individual in diverse locations through different non-overlapping camera views. Starting with two cameras, we propose a novel visual word co-occurrence based appearance model to measure the similarities between pedestrian images. This model naturally accounts for spatial similarities and variations caused by pose, illumination and configuration changes across camera views. As a generalization to multiple camera views, we introduce the Group Membership Prediction (GMP) problem. The GMP problem involves predicting whether a collection of instances shares the same semantic property. In this context, we propose a novel probability model and introduce latent view-specific and view-shared random variables to jointly account for the view-specific appearance and cross-view similarities among data instances. Our method is tested on various benchmarks demonstrating superior accuracy over state-of-art. Semantic Video Retrieval seeks to match complex activities in a surveillance video to user described queries. In surveillance scenarios with noise and clutter usually present, visual uncertainties introduced by error-prone low-level detectors, classifiers and trackers compose a significant part of the semantic gap between user defined queries and the archive video. To bridge the gap, we propose a novel probabilistic activity localization formulation that incorporates learning of object attributes, between-object relationships, and object re-identification without activity-level training data. Our experiments demonstrate that the introduction of similarity learning components effectively compensate for noise and error in previous stages, and result in preferable performance on both aerial and ground surveillance videos. Considering the computational complexity of our similarity learning models, we attempt to develop a way of training complicated models efficiently while remaining good performance. As a proof-of-concept, we propose training deep neural networks for supervised learning of hash codes. With slight changes in the optimization formulation, we could explore the possibilities of incorporating the training framework for Person Re-Identification and related problems.2019-07-09T00:00:00

Similarity learning for person re-identification and semantic video retrieval

Many computer vision problems boil down to the learning of a good visual similarity function that calculates a score of how likely two instances share the same semantic concept. In this thesis, we focus on two problems related to similarity learning: Person Re-Identification, and Semantic Video Retrieval. Person Re-Identification aims to maintain the identity of an individual in diverse locations through different non-overlapping camera views. Starting with two cameras, we propose a novel visual word co-occurrence based appearance model to measure the similarities between pedestrian images. This model naturally accounts for spatial similarities and variations caused by pose, illumination and configuration changes across camera views. As a generalization to multiple camera views, we introduce the Group Membership Prediction (GMP) problem. The GMP problem involves predicting whether a collection of instances shares the same semantic property. In this context, we propose a novel probability model and introduce latent view-specific and view-shared random variables to jointly account for the view-specific appearance and cross-view similarities among data instances. Our method is tested on various benchmarks demonstrating superior accuracy over state-of-art. Semantic Video Retrieval seeks to match complex activities in a surveillance video to user described queries. In surveillance scenarios with noise and clutter usually present, visual uncertainties introduced by error-prone low-level detectors, classifiers and trackers compose a significant part of the semantic gap between user defined queries and the archive video. To bridge the gap, we propose a novel probabilistic activity localization formulation that incorporates learning of object attributes, between-object relationships, and object re-identification without activity-level training data. Our experiments demonstrate that the introduction of similarity learning components effectively compensate for noise and error in previous stages, and result in preferable performance on both aerial and ground surveillance videos. Considering the computational complexity of our similarity learning models, we attempt to develop a way of training complicated models efficiently while remaining good performance. As a proof-of-concept, we propose training deep neural networks for supervised learning of hash codes. With slight changes in the optimization formulation, we could explore the possibilities of incorporating the training framework for Person Re-Identification and related problems.2019-07-09T00:00:00

Information retrieval and text mining technologies for chemistry

Efficient access to chemical information contained in scientific literature, patents, technical reports, or the web is a pressing need shared by researchers and patent attorneys from different chemical disciplines. Retrieval of important chemical information in most cases starts with finding relevant documents for a particular chemical compound or family. Targeted retrieval of chemical documents is closely connected to the automatic recognition of chemical entities in the text, which commonly involves the extraction of the entire list of chemicals mentioned in a document, including any associated information. In this Review, we provide a comprehensive and in-depth description of fundamental concepts, technical implementations, and current technologies for meeting these information demands. A strong focus is placed on community challenges addressing systems performance, more particularly CHEMDNER and CHEMDNER patents tasks of BioCreative IV and V, respectively. Considering the growing interest in the construction of automatically annotated chemical knowledge bases that integrate chemical information and biological data, cheminformatics approaches for mapping the extracted chemical names into chemical structures and their subsequent annotation together with text mining applications for linking chemistry with biological information are also presented. Finally, future trends and current challenges are highlighted as a roadmap proposal for research in this emerging field.A.V. and M.K. acknowledge funding from the European Community’s Horizon 2020 Program (project reference: 654021 - OpenMinted). M.K. additionally acknowledges the Encomienda MINETAD-CNIO as part of the Plan for the Advancement of Language Technology. O.R. and J.O. thank the Foundation for Applied Medical Research (FIMA), University of Navarra (Pamplona, Spain). This work was partially funded by Consellería de Cultura, Educación e Ordenación Universitaria (Xunta de Galicia), and FEDER (European Union), and the Portuguese Foundation for Science and Technology (FCT) under the scope of the strategic funding of UID/BIO/04469/2013 unit and COMPETE 2020 (POCI-01-0145-FEDER-006684). We thank Iñigo Garciá -Yoldi for useful feedback and discussions during the preparation of the manuscript.info:eu-repo/semantics/publishedVersio

Feature based dynamic intra-video indexing

A thesis submitted in partial fulfillment for the degree of Doctor of PhilosophyWith the advent of digital imagery and its wide spread application in all vistas of life, it has become an important component in the world of communication. Video content ranging from broadcast news, sports, personal videos, surveillance, movies and entertainment and similar domains is increasing exponentially in quantity and it is becoming a challenge to retrieve content of interest from the corpora. This has led to an increased interest amongst the researchers to investigate concepts of video structure analysis, feature extraction, content annotation, tagging, video indexing, querying and retrieval to fulfil the requirements. However, most of the previous work is confined within specific domain and constrained by the quality, processing and storage capabilities. This thesis presents a novel framework agglomerating the established approaches from feature extraction to browsing in one system of content based video retrieval. The proposed framework significantly fills the gap identified while satisfying the imposed constraints of processing, storage, quality and retrieval times. The output entails a framework, methodology and prototype application to allow the user to efficiently and effectively retrieved content of interest such as age, gender and activity by specifying the relevant query. Experiments have shown plausible results with an average precision and recall of 0.91 and 0.92 respectively for face detection using Haar wavelets based approach. Precision of age ranges from 0.82 to 0.91 and recall from 0.78 to 0.84. The recognition of gender gives better precision with males (0.89) compared to females while recall gives a higher value with females (0.92). Activity of the subject has been detected using Hough transform and classified using Hiddell Markov Model. A comprehensive dataset to support similar studies has also been developed as part of the research process. A Graphical User Interface (GUI) providing a friendly and intuitive interface has been integrated into the developed system to facilitate the retrieval process. The comparison results of the intraclass correlation coefficient (ICC) shows that the performance of the system closely resembles with that of the human annotator. The performance has been optimised for time and error rate