Extracting Biomolecular Interactions Using Semantic Parsing of Biomedical Text

We advance the state of the art in biomolecular interaction extraction with three contributions: (i) We show that deep, Abstract Meaning Representations (AMR) significantly improve the accuracy of a biomolecular interaction extraction system when compared to a baseline that relies solely on surface- and syntax-based features; (ii) In contrast with previous approaches that infer relations on a sentence-by-sentence basis, we expand our framework to enable consistent predictions over sets of sentences (documents); (iii) We further modify and expand a graph kernel learning framework to enable concurrent exploitation of automatically induced AMR (semantic) and dependency structure (syntactic) representations. Our experiments show that our approach yields interaction extraction systems that are more robust in environments where there is a significant mismatch between training and test conditions.Comment: Appearing in Proceedings of the Thirtieth AAAI Conference on Artificial Intelligence (AAAI-16

Polyglot Semantic Parsing in APIs

Traditional approaches to semantic parsing (SP) work by training individual models for each available parallel dataset of text-meaning pairs. In this paper, we explore the idea of polyglot semantic translation, or learning semantic parsing models that are trained on multiple datasets and natural languages. In particular, we focus on translating text to code signature representations using the software component datasets of Richardson and Kuhn (2017a,b). The advantage of such models is that they can be used for parsing a wide variety of input natural languages and output programming languages, or mixed input languages, using a single unified model. To facilitate modeling of this type, we develop a novel graph-based decoding framework that achieves state-of-the-art performance on the above datasets, and apply this method to two other benchmark SP tasks.Comment: accepted for NAACL-2018 (camera ready version

Towards End-User Development for IoT: A Case Study on Semantic Parsing of Cooking Recipes for Programming Kitchen Devices

Semantic parsing of user-generated instructional text, in the way of enabling end-users to program the Internet of Things (IoT), is an underexplored area. In this study, we provide a unique annotated corpus which aims to support the transformation of cooking recipe instructions to machine-understandable commands for IoT devices in the kitchen. Each of these commands is a tuple capturing the semantics of an instruction involving a kitchen device in terms of "What", "Where", "Why" and "How". Based on this corpus, we developed machine learning-based sequence labelling methods, namely conditional random fields (CRF) and a neural network model, in order to parse recipe instructions and extract our tuples of interest from them. Our results show that while it is feasible to train semantic parsers based on our annotations, most natural-language instructions are incomplete, and thus transforming them into formal meaning representation, is not straightforward.Comment: 8 pages, 1 figure, 2 tables. Work completed in January 202

Translate First Reorder Later: Leveraging Monotonicity in Semantic Parsing

Prior work in semantic parsing has shown that conventional seq2seq models fail at compositional generalization tasks. This limitation led to a resurgence of methods that model alignments between sentences and their corresponding meaning representations, either implicitly through latent variables or explicitly by taking advantage of alignment annotations. We take the second direction and propose TPol, a two-step approach that first translates input sentences monotonically and then reorders them to obtain the correct output. This is achieved with a modular framework comprising a Translator and a Reorderer component. We test our approach on two popular semantic parsing datasets. Our experiments show that by means of the monotonic translations, TPol can learn reliable lexico-logical patterns from aligned data, significantly improving compositional generalization both over conventional seq2seq models, as well as over a recently proposed approach that exploits gold alignments.Comment: 8 pages, 4 figures, 4 table