Exact sampling for intractable probability distributions via a Bernoulli factory

Many applications in the field of statistics require Markov chain Monte Carlo methods. Determining appropriate starting values and run lengths can be both analytically and empirically challenging. A desire to overcome these problems has led to the development of exact, or perfect, sampling algorithms which convert a Markov chain into an algorithm that produces i.i.d. samples from the stationary distribution. Unfortunately, very few of these algorithms have been developed for the distributions that arise in statistical applications, which typically have uncountable support. Here we study an exact sampling algorithm using a geometrically ergodic Markov chain on a general state space. Our work provides a significant reduction to the number of input draws necessary for the Bernoulli factory, which enables exact sampling via a rejection sampling approach. We illustrate the algorithm on a univariate Metropolis-Hastings sampler and a bivariate Gibbs sampler, which provide a proof of concept and insight into hyper-parameter selection. Finally, we illustrate the algorithm on a Bayesian version of the one-way random effects model with data from a styrene exposure study.Comment: 28 pages, 2 figure

Coupling Control Variates for Markov Chain Monte Carlo

We show that Markov couplings can be used to improve the accuracy of Markov chain Monte Carlo calculations in some situations where the steady-state probability distribution is not explicitly known. The technique generalizes the notion of control variates from classical Monte Carlo integration. We illustrate it using two models of nonequilibrium transport

Adaptive Threshold Sampling and Estimation

Sampling is a fundamental problem in both computer science and statistics. A number of issues arise when designing a method based on sampling. These include statistical considerations such as constructing a good sampling design and ensuring there are good, tractable estimators for the quantities of interest as well as computational considerations such as designing fast algorithms for streaming data and ensuring the sample fits within memory constraints. Unfortunately, existing sampling methods are only able to address all of these issues in limited scenarios. We develop a framework that can be used to address these issues in a broad range of scenarios. In particular, it addresses the problem of drawing and using samples under some memory budget constraint. This problem can be challenging since the memory budget forces samples to be drawn non-independently and consequently, makes computation of resulting estimators difficult. At the core of the framework is the notion of a data adaptive thresholding scheme where the threshold effectively allows one to treat the non-independent sample as if it were drawn independently. We provide sufficient conditions for a thresholding scheme to allow this and provide ways to build and compose such schemes. Furthermore, we provide fast algorithms to efficiently sample under these thresholding schemes