Many-Task Computing and Blue Waters

This report discusses many-task computing (MTC) generically and in the context of the proposed Blue Waters systems, which is planned to be the largest NSF-funded supercomputer when it begins production use in 2012. The aim of this report is to inform the BW project about MTC, including understanding aspects of MTC applications that can be used to characterize the domain and understanding the implications of these aspects to middleware and policies. Many MTC applications do not neatly fit the stereotypes of high-performance computing (HPC) or high-throughput computing (HTC) applications. Like HTC applications, by definition MTC applications are structured as graphs of discrete tasks, with explicit input and output dependencies forming the graph edges. However, MTC applications have significant features that distinguish them from typical HTC applications. In particular, different engineering constraints for hardware and software must be met in order to support these applications. HTC applications have traditionally run on platforms such as grids and clusters, through either workflow systems or parallel programming systems. MTC applications, in contrast, will often demand a short time to solution, may be communication intensive or data intensive, and may comprise very short tasks. Therefore, hardware and software for MTC must be engineered to support the additional communication and I/O and must minimize task dispatch overheads. The hardware of large-scale HPC systems, with its high degree of parallelism and support for intensive communication, is well suited for MTC applications. However, HPC systems often lack a dynamic resource-provisioning feature, are not ideal for task communication via the file system, and have an I/O system that is not optimized for MTC-style applications. Hence, additional software support is likely to be required to gain full benefit from the HPC hardware

A Computational Economy for Grid Computing and its Implementation in the Nimrod-G Resource Brok

Computational Grids, coupling geographically distributed resources such as PCs, workstations, clusters, and scientific instruments, have emerged as a next generation computing platform for solving large-scale problems in science, engineering, and commerce. However, application development, resource management, and scheduling in these environments continue to be a complex undertaking. In this article, we discuss our efforts in developing a resource management system for scheduling computations on resources distributed across the world with varying quality of service. Our service-oriented grid computing system called Nimrod-G manages all operations associated with remote execution including resource discovery, trading, scheduling based on economic principles and a user defined quality of service requirement. The Nimrod-G resource broker is implemented by leveraging existing technologies such as Globus, and provides new services that are essential for constructing industrial-strength Grids. We discuss results of preliminary experiments on scheduling some parametric computations using the Nimrod-G resource broker on a world-wide grid testbed that spans five continents

Probabilistic grid scheduling based on job statistics and monitoring information

This transfer thesis presents a novel, probabilistic approach to scheduling applications on computational Grids based on their historical behaviour, current state of the Grid and predictions of the future execution times and resource utilisation of such applications. The work lays a foundation for enabling a more intuitive, user-friendly and effective scheduling technique termed deadline scheduling. Initial work has established motivation and requirements for a more efficient Grid scheduler, able to adaptively handle dynamic nature of the Grid resources and submitted workload. Preliminary scheduler research identified the need for a detailed monitoring of Grid resources on the process level, and for a tool to simulate non-deterministic behaviour and statistical properties of Grid applications. A simulation tool, GridLoader, has been developed to enable modelling of application loads similar to a number of typical Grid applications. GridLoader is able to simulate CPU utilisation, memory allocation and network transfers according to limits set through command line parameters or a configuration file. Its specific strength is in achieving set resource utilisation targets in a probabilistic manner, thus creating a dynamic environment, suitable for testing the scheduler’s adaptability and its prediction algorithm. To enable highly granular monitoring of Grid applications, a monitoring framework based on the Ganglia Toolkit was developed and tested. The suite is able to collect resource usage information of individual Grid applications, integrate it into standard XML based information flow, provide visualisation through a Web portal, and export data into a format suitable for off-line analysis. The thesis also presents initial investigation of the utilisation of University College London Central Computing Cluster facility running Sun Grid Engine middleware. Feasibility of basic prediction concepts based on the historical information and process meta-data have been successfully established and possible scheduling improvements using such predictions identified. The thesis is structured as follows: Section 1 introduces Grid computing and its major concepts; Section 2 presents open research issues and specific focus of the author’s research; Section 3 gives a survey of the related literature, schedulers, monitoring tools and simulation packages; Section 4 presents the platform for author’s work – the Self-Organising Grid Resource management project; Sections 5 and 6 give detailed accounts of the monitoring framework and simulation tool developed; Section 7 presents the initial data analysis while Section 8.4 concludes the thesis with appendices and references

Cosmological Simulations on a Grid of Computers

The work presented in this paper aims at restricting the input parameter values of the semi-analytical model used in GALICS and MOMAF, so as to derive which parameters influence the most the results, e.g., star formation, feedback and halo recycling efficiencies, etc. Our approach is to proceed empirically: we run lots of simulations and derive the correct ranges of values. The computation time needed is so large, that we need to run on a grid of computers. Hence, we model GALICS and MOMAF execution time and output files size, and run the simulation using a grid middleware: DIET. All the complexity of accessing resources, scheduling simulations and managing data is harnessed by DIET and hidden behind a web portal accessible to the users.Comment: Accepted and Published in AIP Conference Proceedings 1241, 2010, pages 816-82

Economic-based Distributed Resource Management and Scheduling for Grid Computing

Computational Grids, emerging as an infrastructure for next generation computing, enable the sharing, selection, and aggregation of geographically distributed resources for solving large-scale problems in science, engineering, and commerce. As the resources in the Grid are heterogeneous and geographically distributed with varying availability and a variety of usage and cost policies for diverse users at different times and, priorities as well as goals that vary with time. The management of resources and application scheduling in such a large and distributed environment is a complex task. This thesis proposes a distributed computational economy as an effective metaphor for the management of resources and application scheduling. It proposes an architectural framework that supports resource trading and quality of services based scheduling. It enables the regulation of supply and demand for resources and provides an incentive for resource owners for participating in the Grid and motives the users to trade-off between the deadline, budget, and the required level of quality of service. The thesis demonstrates the capability of economic-based systems for peer-to-peer distributed computing by developing users' quality-of-service requirements driven scheduling strategies and algorithms. It demonstrates their effectiveness by performing scheduling experiments on the World-Wide Grid for solving parameter sweep applications

Autonomous grid scheduling using probabilistic job runtime scheduling

Computational Grids are evolving into a global, service-oriented architecture – a universal platform for delivering future computational services to a range of applications of varying complexity and resource requirements. The thesis focuses on developing a new scheduling model for general-purpose, utility clusters based on the concept of user requested job completion deadlines. In such a system, a user would be able to request each job to finish by a certain deadline, and possibly to a certain monetary cost. Implementing deadline scheduling is dependent on the ability to predict the execution time of each queued job, and on an adaptive scheduling algorithm able to use those predictions to maximise deadline adherence. The thesis proposes novel solutions to these two problems and documents their implementation in a largely autonomous and self-managing way. The starting point of the work is an extensive analysis of a representative Grid workload revealing consistent workflow patterns, usage cycles and correlations between the execution times of jobs and its properties commonly collected by the Grid middleware for accounting purposes. An automated approach is proposed to identify these dependencies and use them to partition the highly variable workload into subsets of more consistent and predictable behaviour. A range of time-series forecasting models, applied in this context for the first time, were used to model the job execution times as a function of their historical behaviour and associated properties. Based on the resulting predictions of job runtimes a novel scheduling algorithm is able to estimate the latest job start time necessary to meet the requested deadline and sort the queue accordingly to minimise the amount of deadline overrun. The testing of the proposed approach was done using the actual job trace collected from a production Grid facility. The best performing execution time predictor (the auto-regressive moving average method) coupled to workload partitioning based on three simultaneous job properties returned the median absolute percentage error centroid of only 4.75%. This level of prediction accuracy enabled the proposed deadline scheduling method to reduce the average deadline overrun time ten-fold compared to the benchmark batch scheduler. Overall, the thesis demonstrates that deadline scheduling of computational jobs on the Grid is achievable using statistical forecasting of job execution times based on historical information. The proposed approach is easily implementable, substantially self-managing and better matched to the human workflow making it well suited for implementation in the utility Grids of the future