Roto-Translation Covariant Convolutional Networks for Medical Image Analysis

We propose a framework for rotation and translation covariant deep learning using $SE(2)$ group convolutions. The group product of the special Euclidean motion group $SE(2)$ describes how a concatenation of two roto-translations results in a net roto-translation. We encode this geometric structure into convolutional neural networks (CNNs) via $SE(2)$ group convolutional layers, which fit into the standard 2D CNN framework, and which allow to generically deal with rotated input samples without the need for data augmentation. We introduce three layers: a lifting layer which lifts a 2D (vector valued) image to an $SE(2)$-image, i.e., 3D (vector valued) data whose domain is $SE(2)$; a group convolution layer from and to an $SE(2)$-image; and a projection layer from an $SE(2)$-image to a 2D image. The lifting and group convolution layers are $SE(2)$ covariant (the output roto-translates with the input). The final projection layer, a maximum intensity projection over rotations, makes the full CNN rotation invariant. We show with three different problems in histopathology, retinal imaging, and electron microscopy that with the proposed group CNNs, state-of-the-art performance can be achieved, without the need for data augmentation by rotation and with increased performance compared to standard CNNs that do rely on augmentation.Comment: 8 pages, 2 figures, 1 table, accepted at MICCAI 201

Learning to Convolve: A Generalized Weight-Tying Approach

Recent work (Cohen & Welling, 2016) has shown that generalizations of convolutions, based on group theory, provide powerful inductive biases for learning. In these generalizations, filters are not only translated but can also be rotated, flipped, etc. However, coming up with exact models of how to rotate a 3 x 3 filter on a square pixel-grid is difficult. In this paper, we learn how to transform filters for use in the group convolution, focussing on roto-translation. For this, we learn a filter basis and all rotated versions of that filter basis. Filters are then encoded by a set of rotation invariant coefficients. To rotate a filter, we switch the basis. We demonstrate we can produce feature maps with low sensitivity to input rotations, while achieving high performance on MNIST and CIFAR-10.Comment: Accepted to ICML 201

A General Theory of Equivariant CNNs on Homogeneous Spaces

We present a general theory of Group equivariant Convolutional Neural Networks (G-CNNs) on homogeneous spaces such as Euclidean space and the sphere. Feature maps in these networks represent fields on a homogeneous base space, and layers are equivariant maps between spaces of fields. The theory enables a systematic classification of all existing G-CNNs in terms of their symmetry group, base space, and field type. We also consider a fundamental question: what is the most general kind of equivariant linear map between feature spaces (fields) of given types? Following Mackey, we show that such maps correspond one-to-one with convolutions using equivariant kernels, and characterize the space of such kernels

Affine Self Convolution

Attention mechanisms, and most prominently self-attention, are a powerful building block for processing not only text but also images. These provide a parameter efficient method for aggregating inputs. We focus on self-attention in vision models, and we combine it with convolution, which as far as we know, are the first to do. What emerges is a convolution with data dependent filters. We call this an Affine Self Convolution. While this is applied differently at each spatial location, we show that it is translation equivariant. We also modify the Squeeze and Excitation variant of attention, extending both variants of attention to the roto-translation group. We evaluate these new models on CIFAR10 and CIFAR100 and show an improvement in the number of parameters, while reaching comparable or higher accuracy at test time against self-trained baselines

Roto-Translation Equivariant Convolutional Networks: Application to Histopathology Image Analysis

Rotation-invariance is a desired property of machine-learning models for medical image analysis and in particular for computational pathology applications. We propose a framework to encode the geometric structure of the special Euclidean motion group SE(2) in convolutional networks to yield translation and rotation equivariance via the introduction of SE(2)-group convolution layers. This structure enables models to learn feature representations with a discretized orientation dimension that guarantees that their outputs are invariant under a discrete set of rotations. Conventional approaches for rotation invariance rely mostly on data augmentation, but this does not guarantee the robustness of the output when the input is rotated. At that, trained conventional CNNs may require test-time rotation augmentation to reach their full capability. This study is focused on histopathology image analysis applications for which it is desirable that the arbitrary global orientation information of the imaged tissues is not captured by the machine learning models. The proposed framework is evaluated on three different histopathology image analysis tasks (mitosis detection, nuclei segmentation and tumor classification). We present a comparative analysis for each problem and show that consistent increase of performances can be achieved when using the proposed framework

H-NeXt: The next step towards roto-translation invariant networks

The widespread popularity of equivariant networks underscores the significance of parameter efficient models and effective use of training data. At a time when robustness to unseen deformations is becoming increasingly important, we present H-NeXt, which bridges the gap between equivariance and invariance. H-NeXt is a parameter-efficient roto-translation invariant network that is trained without a single augmented image in the training set. Our network comprises three components: an equivariant backbone for learning roto-translation independent features, an invariant pooling layer for discarding roto-translation information, and a classification layer. H-NeXt outperforms the state of the art in classification on unaugmented training sets and augmented test sets of MNIST and CIFAR-10.Comment: Appears in British Machine Vision Conference 2023 (BMVC 2023