1,345 research outputs found
Joint segmentation and classification of retinal arteries/veins from fundus images
Objective Automatic artery/vein (A/V) segmentation from fundus images is
required to track blood vessel changes occurring with many pathologies
including retinopathy and cardiovascular pathologies. One of the clinical
measures that quantifies vessel changes is the arterio-venous ratio (AVR) which
represents the ratio between artery and vein diameters. This measure
significantly depends on the accuracy of vessel segmentation and classification
into arteries and veins. This paper proposes a fast, novel method for semantic
A/V segmentation combining deep learning and graph propagation.
Methods A convolutional neural network (CNN) is proposed to jointly segment
and classify vessels into arteries and veins. The initial CNN labeling is
propagated through a graph representation of the retinal vasculature, whose
nodes are defined as the vessel branches and edges are weighted by the cost of
linking pairs of branches. To efficiently propagate the labels, the graph is
simplified into its minimum spanning tree.
Results The method achieves an accuracy of 94.8% for vessels segmentation.
The A/V classification achieves a specificity of 92.9% with a sensitivity of
93.7% on the CT-DRIVE database compared to the state-of-the-art-specificity and
sensitivity, both of 91.7%.
Conclusion The results show that our method outperforms the leading previous
works on a public dataset for A/V classification and is by far the fastest.
Significance The proposed global AVR calculated on the whole fundus image
using our automatic A/V segmentation method can better track vessel changes
associated to diabetic retinopathy than the standard local AVR calculated only
around the optic disc.Comment: Preprint accepted in Artificial Intelligence in Medicin
Deep Learning in Cardiology
The medical field is creating large amount of data that physicians are unable
to decipher and use efficiently. Moreover, rule-based expert systems are
inefficient in solving complicated medical tasks or for creating insights using
big data. Deep learning has emerged as a more accurate and effective technology
in a wide range of medical problems such as diagnosis, prediction and
intervention. Deep learning is a representation learning method that consists
of layers that transform the data non-linearly, thus, revealing hierarchical
relationships and structures. In this review we survey deep learning
application papers that use structured data, signal and imaging modalities from
cardiology. We discuss the advantages and limitations of applying deep learning
in cardiology that also apply in medicine in general, while proposing certain
directions as the most viable for clinical use.Comment: 27 pages, 2 figures, 10 table
Delineation of line patterns in images using B-COSFIRE filters
Delineation of line patterns in images is a basic step required in various
applications such as blood vessel detection in medical images, segmentation of
rivers or roads in aerial images, detection of cracks in walls or pavements,
etc. In this paper we present trainable B-COSFIRE filters, which are a model of
some neurons in area V1 of the primary visual cortex, and apply it to the
delineation of line patterns in different kinds of images. B-COSFIRE filters
are trainable as their selectivity is determined in an automatic configuration
process given a prototype pattern of interest. They are configurable to detect
any preferred line structure (e.g. segments, corners, cross-overs, etc.), so
usable for automatic data representation learning. We carried out experiments
on two data sets, namely a line-network data set from INRIA and a data set of
retinal fundus images named IOSTAR. The results that we achieved confirm the
robustness of the proposed approach and its effectiveness in the delineation of
line structures in different kinds of images.Comment: International Work Conference on Bioinspired Intelligence, July
10-13, 201
Automated Fovea Detection Based on Unsupervised Retinal Vessel Segmentation Method
The Computer Assisted Diagnosis systems could save workloads and give objective diagnostic to ophthalmologists. At first level of automated screening of systems feature extraction is the fundamental step. One of these retinal features is the fovea. The fovea is a small fossa on the fundus, which is represented by a deep-red or red-brown color in color retinal images. By observing retinal images, it appears that the main vessels diverge from the optic nerve head and follow a specific course that can be geometrically modeled as a parabola, with a common vertex inside the optic nerve head and the fovea located along the apex of this parabola curve. Therefore, based on this assumption, the main retinal blood vessels are segmented and fitted to a parabolic model. With respect to the core vascular structure, we can thus detect fovea in the fundus images. For the vessel segmentation, our algorithm addresses the image locally where homogeneity of features is more likely to occur. The algorithm is composed of 4 steps: multi-overlapping windows, local Radon transform, vessel validation, and parabolic fitting. In order to extract blood vessels, sub-vessels should be extracted in local windows. The high contrast between blood vessels and image background in the images cause the vessels to be associated with peaks in the Radon space. The largest vessels, using a high threshold of the Radon transform, determines the main course or overall configuration of the blood vessels which when fitted to a parabola, leads to the future localization of the fovea. In effect, with an accurate fit, the fovea normally lies along the slope joining the vertex and the focus. The darkest region along this line is the indicative of the fovea. To evaluate our method, we used 220 fundus images from a rural database (MUMS-DB) and one public one (DRIVE). The results show that, among 20 images of the first public database (DRIVE) we detected fovea in 85% of them. Also for the MUMS-DB database among 200 images we detect fovea correctly in 83% on them
Supervised machine learning based multi-task artificial intelligence classification of retinopathies
Artificial intelligence (AI) classification holds promise as a novel and
affordable screening tool for clinical management of ocular diseases. Rural and
underserved areas, which suffer from lack of access to experienced
ophthalmologists may particularly benefit from this technology. Quantitative
optical coherence tomography angiography (OCTA) imaging provides excellent
capability to identify subtle vascular distortions, which are useful for
classifying retinovascular diseases. However, application of AI for
differentiation and classification of multiple eye diseases is not yet
established. In this study, we demonstrate supervised machine learning based
multi-task OCTA classification. We sought 1) to differentiate normal from
diseased ocular conditions, 2) to differentiate different ocular disease
conditions from each other, and 3) to stage the severity of each ocular
condition. Quantitative OCTA features, including blood vessel tortuosity (BVT),
blood vascular caliber (BVC), vessel perimeter index (VPI), blood vessel
density (BVD), foveal avascular zone (FAZ) area (FAZ-A), and FAZ contour
irregularity (FAZ-CI) were fully automatically extracted from the OCTA images.
A stepwise backward elimination approach was employed to identify sensitive
OCTA features and optimal-feature-combinations for the multi-task
classification. For proof-of-concept demonstration, diabetic retinopathy (DR)
and sickle cell retinopathy (SCR) were used to validate the supervised machine
leaning classifier. The presented AI classification methodology is applicable
and can be readily extended to other ocular diseases, holding promise to enable
a mass-screening platform for clinical deployment and telemedicine.Comment: Supplemental material attached at the en
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