Phase Retrieval with Application to Optical Imaging

This review article provides a contemporary overview of phase retrieval in optical imaging, linking the relevant optical physics to the information processing methods and algorithms. Its purpose is to describe the current state of the art in this area, identify challenges, and suggest vision and areas where signal processing methods can have a large impact on optical imaging and on the world of imaging at large, with applications in a variety of fields ranging from biology and chemistry to physics and engineering

Critical Parameter Values and Reconstruction Properties of Discrete Tomography: Application to Experimental Fluid Dynamics

We analyze representative ill-posed scenarios of tomographic PIV with a focus on conditions for unique volume reconstruction. Based on sparse random seedings of a region of interest with small particles, the corresponding systems of linear projection equations are probabilistically analyzed in order to determine (i) the ability of unique reconstruction in terms of the imaging geometry and the critical sparsity parameter, and (ii) sharpness of the transition to non-unique reconstruction with ghost particles when choosing the sparsity parameter improperly. The sparsity parameter directly relates to the seeding density used for PIV in experimental fluids dynamics that is chosen empirically to date. Our results provide a basic mathematical characterization of the PIV volume reconstruction problem that is an essential prerequisite for any algorithm used to actually compute the reconstruction. Moreover, we connect the sparse volume function reconstruction problem from few tomographic projections to major developments in compressed sensing.Comment: 22 pages, submitted to Fundamenta Informaticae. arXiv admin note: text overlap with arXiv:1208.589

Phase Retrieval for Sparse Signals: Uniqueness Conditions

In a variety of fields, in particular those involving imaging and optics, we often measure signals whose phase is missing or has been irremediably distorted. Phase retrieval attempts the recovery of the phase information of a signal from the magnitude of its Fourier transform to enable the reconstruction of the original signal. A fundamental question then is: "Under which conditions can we uniquely recover the signal of interest from its measured magnitudes?" In this paper, we assume the measured signal to be sparse. This is a natural assumption in many applications, such as X-ray crystallography, speckle imaging and blind channel estimation. In this work, we derive a sufficient condition for the uniqueness of the solution of the phase retrieval (PR) problem for both discrete and continuous domains, and for one and multi-dimensional domains. More precisely, we show that there is a strong connection between PR and the turnpike problem, a classic combinatorial problem. We also prove that the existence of collisions in the autocorrelation function of the signal may preclude the uniqueness of the solution of PR. Then, assuming the absence of collisions, we prove that the solution is almost surely unique on 1-dimensional domains. Finally, we extend this result to multi-dimensional signals by solving a set of 1-dimensional problems. We show that the solution of the multi-dimensional problem is unique when the autocorrelation function has no collisions, significantly improving upon a previously known result.Comment: submitted to IEEE TI

Compressive auto-indexing in femtosecond nanocrystallography

Ultrafast nanocrystallography has the potential to revolutionize biology by enabling structural elucidation of proteins for which it is possible to grow crystals with 10 or fewer unit cells on the side. The success of nanocrystallography depends on robust orientation-determination procedures that allow us to average diffraction data from multiple nanocrystals to produce a three dimensional (3D) diffraction data volume with a high signal-to-noise ratio. Such a 3D diffraction volume can then be phased using standard crystallographic techniques. "Indexing" algorithms used in crystallography enable orientation determination of diffraction data from a single crystal when a relatively large number of reflections are recorded. Here we show that it is possible to obtain the exact lattice geometry from a smaller number of measurements than standard approaches using a basis pursuit solver.Comment: Spence Festschrift on Ultramicroscop