Identification of Gastroenteric Viruses by Electron Microscopy Using Higher Order Spectral Features

Background: Many paediatric illnesses are caused by viral agents, for example, acute gastroenteritis. Electron microscopy can provide images of viral particles and can be used to identify the agents. Objectives: The use of electron microscopy as a diagnostic tool is limited by the need for high level of expertise in interpreting these images and the time required. A semi-automated method is proposed in this paper. Study design: The method is based on bispectal features that capture contour and texture information while providing robustness to shift, rotation, changes in size and noise. The magnification or true size of the viral particles need not be known precisely, but if available can be used additionally for improved classification. Viral particles from one or more images are segmented and analyzed to verify whether they belong to a particular class (such as Adenovirus, Rotavirus, etc.) or not. Two experiments were conducted—depending on the populations from which virus particle images were collected for training and testing, respectively. In the first, disjoint subsets from a pooled population of virus particles obtained from several images were used. In the second, separate populations from separate images were used. The performance of the method on viruses of similar size was separately evaluated using Astrovirus, HAV and Poliovirus. A Gaussian Mixture Model was used for the probability density of the features. A threshold on the log-likelihood is varied to study false alarm and false rejection trade-off. Features from many particles and/or likelihoods from independent tests are averaged to yield better performance. Results: An equal error rate (EER) of 2% is obtained for verification of Rotavirus (tested against three other viruses) when features from 15 viral particle images are averaged. It drops further to less than 0.2% when scores from two tests are averaged to make a decision. For verification of Astrovirus (tested against two others of the same size) the EER was less than 2% when 20 particles and two tests were used. Conclusion: Bispectral features and Gaussian mixture modelling of their probability density are shown to be effective in identifying viruses from electron microscope images. With the use of digital imaging in electron microscopes, this method can be fully automated

Gabor Barcodes for Medical Image Retrieval

In recent years, advances in medical imaging have led to the emergence of massive databases, containing images from a diverse range of modalities. This has significantly heightened the need for automated annotation of the images on one side, and fast and memory-efficient content-based image retrieval systems on the other side. Binary descriptors have recently gained more attention as a potential vehicle to achieve these goals. One of the recently introduced binary descriptors for tagging of medical images are Radon barcodes (RBCs) that are driven from Radon transform via local thresholding. Gabor transform is also a powerful transform to extract texture-based information. Gabor features have exhibited robustness against rotation, scale, and also photometric disturbances, such as illumination changes and image noise in many applications. This paper introduces Gabor Barcodes (GBCs), as a novel framework for the image annotation. To find the most discriminative GBC for a given query image, the effects of employing Gabor filters with different parameters, i.e., different sets of scales and orientations, are investigated, resulting in different barcode lengths and retrieval performances. The proposed method has been evaluated on the IRMA dataset with 193 classes comprising of 12,677 x-ray images for indexing, and 1,733 x-rays images for testing. A total error score as low as $351$ ($\approx 80\%$ accuracy for the first hit) was achieved.Comment: To appear in proceedings of The 2016 IEEE International Conference on Image Processing (ICIP 2016), Sep 25-28, 2016, Phoenix, Arizona, US

Elliptical Monogenic Wavelets for the analysis and processing of color images

International audienceThis paper studies and gives new algorithms for image processing based on monogenic wavelets. Existing greyscale monogenic filterbanks are reviewed and we reveal a lack of discussion about the synthesis part. The monogenic synthesis is therefore defined from the idea of wavelet modulation, and an innovative filterbank is constructed by using the Radon transform. The color extension is then investigated. First, the elliptical Fourier atom model is proposed to generalize theanalytic signal representation for vector-valued signals. Then a color Riesz-transform is defined so as to construct color elliptical monogenic wavelets. Our Radon-based monogenic filterbank can be easily extended to color according to this definition. The proposed wavelet representation provides efficient analysis of local features in terms of shape and color, thanks to the concepts of amplitude, phase, orientation, and ellipse parameters. The synthesis from local features is deeply studied. We conclude the article by defining the color local frequency, proposing an estimation algorithm

MULTIRIDGELETS FOR TEXTURE ANALYSIS

Directional wavelets have orientation selectivity and thus are able to efficiently represent highly anisotropic elements such as line segments and edges. Ridgelet transform is a kind of directional multi-resolution transform and has been successful in many image processing and texture analysis applications. The objective of this research is to develop multi-ridgelet transform by applying multiwavelet transform to the Radon transform so as to attain attractive improvements. By adapting the cardinal orthogonal multiwavelets to the ridgelet transform, it is shown that the proposed cardinal multiridgelet transform (CMRT) possesses cardinality, approximate translation invariance, and approximate rotation invariance simultaneously, whereas no single ridgelet transform can hold all these properties at the same time. These properties are beneficial to image texture analysis. This is demonstrated in three studies of texture analysis applications. Firstly a texture database retrieval study taking a portion of the Brodatz texture album as an example has demonstrated that the CMRT-based texture representation for database retrieval performed better than other directional wavelet methods. Secondly the study of the LCD mura defect detection was based upon the classification of simulated abnormalities with a linear support vector machine classifier, the CMRT-based analysis of defects were shown to provide efficient features for superior detection performance than other competitive methods. Lastly and the most importantly, a study on the prostate cancer tissue image classification was conducted. With the CMRT-based texture extraction, Gaussian kernel support vector machines have been developed to discriminate prostate cancer Gleason grade 3 versus grade 4. Based on a limited database of prostate specimens, one classifier was trained to have remarkable test performance. This approach is unquestionably promising and is worthy to be fully developed

A HIERARCHICAL APPROACH TO ROTATION-INVARIANT TEXTURE FEATURE EXTRACTION BASED ON RADON TRANSFORM PARAMETERS

ABSTRACT In this paper, we propose an efficient hierarchical method for extracting invariant texture features using the Gabor wavelets and Radon transform parameters. The proposed method applies the Radon transform to estimate the directional information in the highband texture image extracted by Gabor wavelets. The directional information is then used to make the texture feature invariant to rotation. To show the efficiency of our scheme, we developed a texture-based image retrieval system based on the proposed method and evaluated it on a set of images from the Brodatz album. Experimental results show that the proposed system outperforms previous rotation-invariant systems significantly

Portable Camera Based Assistive Pattern Recognition for Visually Challenged Persons

Choosing clothes, food recognition and traffic signal analysis are major challenges for visually impaired persons. The existing automatic clothing pattern recognition is also a challenging research problem due to rotation, scaling, illumination, and especially large intra class pattern variations. This project, a camera based assistive framework is proposed to help blind persons for identification of food pattern, clothe pattern and colors in their daily lives. The existing traffic signal using sensors method is difficult to analysis and many components used. A camera based traffic signal analysis method easy to handle, to provide clear traffic signal analysis and reduce the time delay. The system contains the following major components 1) a camera for capturing clothe, food and traffic signal images, a microphone for speech command input; 2) data capture and analysis to perform command control, recognize clothe patterns, food patterns and traffic signal identification by using a wearable computer and 3) a speaker to provide the name of audio outputs of clothe patterns and colors, food patterns and traffic signal analysis, as well as system status. To handle the large intra class variations, a novel descriptor, Radon Signature is proposed to capture the global directionality of clothe patterns, food patterns and traffic signal analysis. To evaluate the effectiveness of the proposed approach CCNY clothes Pattern dataset is used. Our approach achieves 92.55% recognition to improve the life quality, do not depend others. DOI: 10.17762/ijritcc2321-8169.15032