908 research outputs found
Matched filters for noisy induced subgraph detection
First author draftWe consider the problem of finding the vertex correspondence between two graphs with different number of vertices where the smaller graph is still potentially large. We propose a solution to this problem via a graph matching matched filter: padding the smaller graph in different ways and then using graph matching methods to align it to the larger network. Under a statistical model for correlated pairs of graphs, which yields a noisy copy of the small graph within the larger graph, the resulting optimization problem can be guaranteed to recover the true vertex correspondence between the networks, though there are currently no efficient algorithms for solving this problem. We consider an approach that exploits a partially known correspondence and show via varied simulations and applications to the Drosophila connectome that in practice this approach can achieve good performance.https://arxiv.org/abs/1803.02423https://arxiv.org/abs/1803.0242
Matched Filters for Noisy Induced Subgraph Detection
The problem of finding the vertex correspondence between two noisy graphs
with different number of vertices where the smaller graph is still large has
many applications in social networks, neuroscience, and computer vision. We
propose a solution to this problem via a graph matching matched filter:
centering and padding the smaller adjacency matrix and applying graph matching
methods to align it to the larger network. The centering and padding schemes
can be incorporated into any algorithm that matches using adjacency matrices.
Under a statistical model for correlated pairs of graphs, which yields a noisy
copy of the small graph within the larger graph, the resulting optimization
problem can be guaranteed to recover the true vertex correspondence between the
networks.
However, there are currently no efficient algorithms for solving this
problem. To illustrate the possibilities and challenges of such problems, we
use an algorithm that can exploit a partially known correspondence and show via
varied simulations and applications to {\it Drosophila} and human connectomes
that this approach can achieve good performance.Comment: 41 pages, 7 figure
A High-Throughput Solver for Marginalized Graph Kernels on GPU
We present the design and optimization of a linear solver on General Purpose GPUs for the efficient and high-throughput evaluation of the marginalized graph kernel between pairs of labeled graphs. The solver implements a preconditioned conjugate gradient (PCG) method to compute the solution to a generalized Laplacian equation associated with the tensor product of two graphs. To cope with the gap between the instruction throughput and the memory bandwidth of current generation GPUs, our solver forms the tensor product linear system on-the-fly without storing it in memory when performing matrix-vector dot product operations in PCG. Such on-the-fly computation is accomplished by using threads in a warp to cooperatively stream the adjacency and edge label matrices of individual graphs by small square matrix blocks called tiles, which are then staged in registers and the shared memory for later reuse. Warps across a thread block can further share tiles via the shared memory to increase data reuse. We exploit the sparsity of the graphs hierarchically by storing only non-empty tiles using a coordinate format and nonzero elements within each tile using bitmaps. Besides, we propose a new partition-based reordering algorithm for aggregating nonzero elements of the graphs into fewer but denser tiles to improve the efficiency of the sparse format.We carry out extensive theoretical analyses on the graph tensor product primitives for tiles of various density and evaluate their performance on synthetic and real-world datasets. Our solver delivers three to four orders of magnitude speedup over existing CPU-based solvers such as GraKeL and GraphKernels. The capability of the solver enables kernel-based learning tasks at unprecedented scales
Proceedings of the second "international Traveling Workshop on Interactions between Sparse models and Technology" (iTWIST'14)
The implicit objective of the biennial "international - Traveling Workshop on
Interactions between Sparse models and Technology" (iTWIST) is to foster
collaboration between international scientific teams by disseminating ideas
through both specific oral/poster presentations and free discussions. For its
second edition, the iTWIST workshop took place in the medieval and picturesque
town of Namur in Belgium, from Wednesday August 27th till Friday August 29th,
2014. The workshop was conveniently located in "The Arsenal" building within
walking distance of both hotels and town center. iTWIST'14 has gathered about
70 international participants and has featured 9 invited talks, 10 oral
presentations, and 14 posters on the following themes, all related to the
theory, application and generalization of the "sparsity paradigm":
Sparsity-driven data sensing and processing; Union of low dimensional
subspaces; Beyond linear and convex inverse problem; Matrix/manifold/graph
sensing/processing; Blind inverse problems and dictionary learning; Sparsity
and computational neuroscience; Information theory, geometry and randomness;
Complexity/accuracy tradeoffs in numerical methods; Sparsity? What's next?;
Sparse machine learning and inference.Comment: 69 pages, 24 extended abstracts, iTWIST'14 website:
http://sites.google.com/site/itwist1
Multimodal Network Alignment
A multimodal network encodes relationships between the same set of nodes in
multiple settings, and network alignment is a powerful tool for transferring
information and insight between a pair of networks. We propose a method for
multimodal network alignment that computes a matrix which indicates the
alignment, but produces the result as a low-rank factorization directly. We
then propose new methods to compute approximate maximum weight matchings of
low-rank matrices to produce an alignment. We evaluate our approach by applying
it on synthetic networks and use it to de-anonymize a multimodal transportation
network.Comment: 14 pages, 6 figures, Siam Data Mining 201
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