On the complexity of optimal homotopies

In this article, we provide new structural results and algorithms for the Homotopy Height problem. In broad terms, this problem quantifies how much a curve on a surface needs to be stretched to sweep continuously between two positions. More precisely, given two homotopic curves $\gamma_1$ and $\gamma_2$ on a combinatorial (say, triangulated) surface, we investigate the problem of computing a homotopy between $\gamma_1$ and $\gamma_2$ where the length of the longest intermediate curve is minimized. Such optimal homotopies are relevant for a wide range of purposes, from very theoretical questions in quantitative homotopy theory to more practical applications such as similarity measures on meshes and graph searching problems. We prove that Homotopy Height is in the complexity class NP, and the corresponding exponential algorithm is the best one known for this problem. This result builds on a structural theorem on monotonicity of optimal homotopies, which is proved in a companion paper. Then we show that this problem encompasses the Homotopic Fr\'echet distance problem which we therefore also establish to be in NP, answering a question which has previously been considered in several different settings. We also provide an O(log n)-approximation algorithm for Homotopy Height on surfaces by adapting an earlier algorithm of Har-Peled, Nayyeri, Salvatipour and Sidiropoulos in the planar setting

Algorithms to automatically quantify the geometric similarity of anatomical surfaces

We describe new approaches for distances between pairs of 2-dimensional surfaces (embedded in 3-dimensional space) that use local structures and global information contained in inter-structure geometric relationships. We present algorithms to automatically determine these distances as well as geometric correspondences. This is motivated by the aspiration of students of natural science to understand the continuity of form that unites the diversity of life. At present, scientists using physical traits to study evolutionary relationships among living and extinct animals analyze data extracted from carefully defined anatomical correspondence points (landmarks). Identifying and recording these landmarks is time consuming and can be done accurately only by trained morphologists. This renders these studies inaccessible to non-morphologists, and causes phenomics to lag behind genomics in elucidating evolutionary patterns. Unlike other algorithms presented for morphological correspondences our approach does not require any preliminary marking of special features or landmarks by the user. It also differs from other seminal work in computational geometry in that our algorithms are polynomial in nature and thus faster, making pairwise comparisons feasible for significantly larger numbers of digitized surfaces. We illustrate our approach using three datasets representing teeth and different bones of primates and humans, and show that it leads to highly accurate results.Comment: Changes with respect to v1, v2: an Erratum was added, correcting the references for one of the three datasets. Note that the datasets and code for this paper can be obtained from the Data Conservancy (see Download column on v1, v2