Application-driven network management with ProtoRINA

Traditional network management is tied to the TCP/IP architecture, thus it inherits its many limitations, e.g., static management and one-size-fits-all structure. Additionally there is no unified framework for application management, and service (application) providers have to rely on their own ad-hoc mechanisms to manage their application services. The Recursive InterNetwork Architecture (RINA) is our solution to achieve better network management. RINA provides a unified framework for application-driven network management along with built-in mechanisms (including registration, authentication, enrollment, addressing, etc.), and it allows the dynamic formation of secure communication containers for service providers in support of various requirements. In this paper, we focus on how application-driven network management can be achieved over the GENI testbed using ProtoRINA, a user-space prototype of RINA. We demonstrate how video can be efficiently multicast to many clients on demand by dynamically creating a delivery tree. Under RINA, multicast can be enabled through a secure communication container that is dynamically formed to support video transport either through application proxies or via relay IPC processes. Experimental results over the GENI testbed show that application-driven network management enabled by ProtoRINA can achieve better network and application performance.National Science Foundation (NSF grant CNS-0963974)

Generating Coherent Messages in Real-time Decision Support: Exploiting Discourse Theory for Discourse Practice

This paper presents a message planner, TraumaGEN, that draws on rhetorical structure and discourse theory to address the problem of producing integrated messages from individual critiques, each of which is designed to achieve its own communicative goal. TraumaGEN takes into account the purpose of the messages, the situation in which the messages will be received, and the social role of the system.Comment: 6 page

Modelling the burden caused by gene expression: an in silico investigation into the interactions between synthetic gene circuits and their chassis cell

In this paper we motivate and develop a model of gene expression for the purpose of studying the interaction between synthetic gene circuits and the chassis cell within which they are in- serted. This model focuses on the translational aspect of gene expression as this is where the literature suggests the crucial interaction between gene expression and shared resources lies

Multi-layer virtual transport network management

Nowadays there is an increasing need for a general paradigm which can simplify network management and further enable network innovations. Software Defined Networking (SDN) is an efficient way to make the network programmable and reduce management complexity, however it is plagued with limitations inherited from the legacy Internet (TCP/IP) architecture. In this paper, in response to limitations of current Software Defined Networking (SDN) management solutions, we propose a recursive approach to enterprise network management, where network management is done through managing various Virtual Transport Networks (VTNs) over different scopes (i.e., regions of operation). Different from the traditional virtual network model which mainly focuses on routing/tunneling, our VTN provides communication service with explicit Quality-of-Service (QoS) support for applications via transport flows, and it involves all mechanisms (e.g., addressing, routing, error and flow control, resource allocation) needed to support such transport flows. Based on this approach, we design and implement a management architecture, which recurses the same VTN-based management mechanism for enterprise network management. Our experimental results show that our management architecture achieves better performance.National Science Foundation awards: CNS-0963974 and CNS-1346688

An Adaptive Policy Management Approach to BGP Convergence

The Border Gateway Protocol (BGP) is the current inter-domain routing protocol used to exchange reachability information between Autonomous Systems (ASes) in the Internet. BGP supports policy-based routing which allows each AS to independently adopt a set of local policies that specify which routes it accepts and advertises from/to other networks, as well as which route it prefers when more than one route becomes available. However, independently chosen local policies may cause global conflicts, which result in protocol divergence. In this paper, we propose a new algorithm, called Adaptive Policy Management Scheme (APMS), to resolve policy conflicts in a distributed manner. Akin to distributed feedback control systems, each AS independently classifies the state of the network as either conflict-free or potentially-conflicting by observing its local history only (namely, route flaps). Based on the degree of measured conflicts (policy conflict-avoidance vs. -control mode), each AS dynamically adjusts its own path preferences—increasing its preference for observably stable paths over flapping paths. APMS also includes a mechanism to distinguish route flaps due to topology changes, so as not to confuse them with those due to policy conflicts. A correctness and convergence analysis of APMS based on the substability property of chosen paths is presented. Implementation in the SSF network simulator is performed, and simulation results for different performance metrics are presented. The metrics capture the dynamic performance (in terms of instantaneous throughput, delay, routing load, etc.) of APMS and other competing solutions, thus exposing the often neglected aspects of performance.National Science Foundation (ANI-0095988, EIA-0202067, ITR ANI-0205294

Application of The Method of Elastic Maps In Analysis of Genetic Texts

Abstract - Method of elastic maps ( http://cogprints.ecs.soton.ac.uk/archive/00003088/ and http://cogprints.ecs.soton.ac.uk/archive/00003919/ ) allows us to construct efficiently 1D, 2D and 3D non-linear approximations to the principal manifolds with different topology (piece of plane, sphere, torus etc.) and to project data onto it. We describe the idea of the method and demonstrate its applications in analysis of genetic sequences. The animated 3D-scatters are available on our web-site: http://www.ihes.fr/~zinovyev/7clusters/ We found the universal cluster structure of genetic sequences, and demonstrated the thin structure of these clusters for coding regions. This thin structure is related to different translational efficiency

Visualization of Data by Method of Elastic Maps and Its Applications in Genomics, Economics and Sociology

Technology of data visualization and data modeling is suggested. The basic of the technology is original idea of elastic net and methods of its construction and application. A short review of relevant methods has been made. The methods proposed are illustrated by applying them to the real economical, sociological and biological datasets and to some model data distributions. The basic of the technology is original idea of elastic net - regular point approximation of some manifold that is put into the multidimensional space and has in a certain sense minimal energy. This manifold is an analogue of principal surface and serves as non-linear screen on what multidimensional data are projected. Remarkable feature of the technology is its ability to work with and to fill gaps in data tables. Gaps are unknown or unreliable values of some features. It gives a possibility to predict plausibly values of unknown features by values of other ones. So it provides technology of constructing different prognosis systems and non-linear regressions. The technology can be used by specialists in different fields. There are several examples of applying the method presented in the end of this paper