Bayesian separation of spectral sources under non-negativity and full additivity constraints

This paper addresses the problem of separating spectral sources which are linearly mixed with unknown proportions. The main difficulty of the problem is to ensure the full additivity (sum-to-one) of the mixing coefficients and non-negativity of sources and mixing coefficients. A Bayesian estimation approach based on Gamma priors was recently proposed to handle the non-negativity constraints in a linear mixture model. However, incorporating the full additivity constraint requires further developments. This paper studies a new hierarchical Bayesian model appropriate to the non-negativity and sum-to-one constraints associated to the regressors and regression coefficients of linear mixtures. The estimation of the unknown parameters of this model is performed using samples generated using an appropriate Gibbs sampler. The performance of the proposed algorithm is evaluated through simulation results conducted on synthetic mixture models. The proposed approach is also applied to the processing of multicomponent chemical mixtures resulting from Raman spectroscopy.Comment: v4: minor grammatical changes; Signal Processing, 200

Data augmentation in Rician noise model and Bayesian Diffusion Tensor Imaging

Mapping white matter tracts is an essential step towards understanding brain function. Diffusion Magnetic Resonance Imaging (dMRI) is the only noninvasive technique which can detect in vivo anisotropies in the 3-dimensional diffusion of water molecules, which correspond to nervous fibers in the living brain. In this process, spectral data from the displacement distribution of water molecules is collected by a magnetic resonance scanner. From the statistical point of view, inverting the Fourier transform from such sparse and noisy spectral measurements leads to a non-linear regression problem. Diffusion tensor imaging (DTI) is the simplest modeling approach postulating a Gaussian displacement distribution at each volume element (voxel). Typically the inference is based on a linearized log-normal regression model that can fit the spectral data at low frequencies. However such approximation fails to fit the high frequency measurements which contain information about the details of the displacement distribution but have a low signal to noise ratio. In this paper, we directly work with the Rice noise model and cover the full range of $b$-values. Using data augmentation to represent the likelihood, we reduce the non-linear regression problem to the framework of generalized linear models. Then we construct a Bayesian hierarchical model in order to perform simultaneously estimation and regularization of the tensor field. Finally the Bayesian paradigm is implemented by using Markov chain Monte Carlo.Comment: 37 pages, 3 figure

Likelihood informed dimension reduction for inverse problems in remote sensing of atmospheric constituent profiles

We use likelihood informed dimension reduction (LIS) (T. Cui et al. 2014) for inverting vertical profile information of atmospheric methane from ground based Fourier transform infrared (FTIR) measurements at Sodankyl\"a, Northern Finland. The measurements belong to the word wide TCCON network for greenhouse gas measurements and, in addition to providing accurate greenhouse gas measurements, they are important for validating satellite observations. LIS allows construction of an efficient Markov chain Monte Carlo sampling algorithm that explores only a reduced dimensional space but still produces a good approximation of the original full dimensional Bayesian posterior distribution. This in effect makes the statistical estimation problem independent of the discretization of the inverse problem. In addition, we compare LIS to a dimension reduction method based on prior covariance matrix truncation used earlier (S. Tukiainen et al. 2016)

Assessing the relationship between spectral solar irradiance and stratospheric ozone using Bayesian inference

We investigate the relationship between spectral solar irradiance (SSI) and ozone in the tropical upper stratosphere. We find that solar cycle (SC) changes in ozone can be well approximated by considering the ozone response to SSI changes in a small number individual wavelength bands between 176 and 310 nm, operating independently of each other. Additionally, we find that the ozone varies approximately linearly with changes in the SSI. Using these facts, we present a Bayesian formalism for inferring SC SSI changes and uncertainties from measured SC ozone profiles. Bayesian inference is a powerful, mathematically self-consistent method of considering both the uncertainties of the data and additional external information to provide the best estimate of parameters being estimated. Using this method, we show that, given measurement uncertainties in both ozone and SSI datasets, it is not currently possible to distinguish between observed or modelled SSI datasets using available estimates of ozone change profiles, although this might be possible by the inclusion of other external constraints. Our methodology has the potential, using wider datasets, to provide better understanding of both variations in SSI and the atmospheric response.Comment: 21 pages, 4 figures, Journal of Space Weather and Space Climate (accepted), pdf version is in draft mode of Space Weather and Space Climat